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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13489 and 13490 are separated by 442 nucleotides
13490 and 13491 are separated by 515 nucleotides
13491 and 13492 are separated by 149 nucleotides
13492 and 13493 are separated by 177 nucleotides
mRNA_5121: 13489 - K01137 GNS N-acetylglucosamine-6-sulfatase, at 1,809,104 to 1,811,514
13489
mRNA_5122: 13490 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 1,811,957 to 1,814,516
13490
mRNA_5123: 13491 - K14826 FPR3_4 FK506-binding nuclear protein, at 1,815,032 to 1,816,842
13491
mRNA_5124: 13492 - K13248 PHOSPHO2 pyridoxal phosphate phosphatase PHOSPHO2, at 1,816,992 to 1,818,246
13492
mRNA_5125: 13493 - Interpro Protein of unknown function (DUF3431), at 1,818,424 to 1,820,541
13493
Group
Condition
mRNA
_5121
mRNA
_5122
mRNA
_5123
mRNA
_5124
mRNA
_5125
13489
13490
13491
13492
13493
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.0
-0.1
N.D.
-2.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.2
-0.7
N.D.
-1.4
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.1
+0.0
N.D.
-0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.6
+0.2
-0.4
N.D.
-0.8
growth on ypd
YPD
+0.2
+0.1
-0.4
N.D.
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.4
-0.5
N.D.
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.1
+0.0
N.D.
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.4
-0.0
N.D.
-0.5
growth on ricinoleic acid
YNB Glucose
-0.2
+0.3
+0.1
N.D.
+0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.1
+0.0
N.D.
+0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.6
+0.4
+0.4
N.D.
-0.9
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
+0.3
-0.0
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
+0.4
+0.1
N.D.
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.1
+0.5
N.D.
+0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.2
+0.5
N.D.
+0.5
growth on oleic acid
YNB Glucose
+0.2
+0.2
+0.2
N.D.
+0.5
auxotrophy
YNB Glucose
-0.2
+0.4
+0.4
N.D.
+0.6
auxotrophy
Dropout Complete
-0.3
+0.0
+0.7
N.D.
+0.8
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
+0.4
+0.9
N.D.
+1.0
growth on oleic acid
YNB Oleic Acid
+0.4
+0.0
+0.6
N.D.
+0.9
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
+0.5
+0.6
N.D.
+1.4
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