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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13490 and 13491 are separated by 515 nucleotides
13491 and 13492 are separated by 149 nucleotides
13492 and 13493 are separated by 177 nucleotides
13493 and 13494 are separated by 123 nucleotides
mRNA_5122: 13490 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 1,811,957 to 1,814,516
13490
mRNA_5123: 13491 - K14826 FPR3_4 FK506-binding nuclear protein, at 1,815,032 to 1,816,842
13491
mRNA_5124: 13492 - K13248 PHOSPHO2 pyridoxal phosphate phosphatase PHOSPHO2, at 1,816,992 to 1,818,246
13492
mRNA_5125: 13493 - Interpro Protein of unknown function (DUF3431), at 1,818,424 to 1,820,541
13493
mRNA_5126: 13494 - Hypothetical Protein, at 1,820,665 to 1,821,231
13494
Group
Condition
mRNA
_5122
mRNA
_5123
mRNA
_5124
mRNA
_5125
mRNA
_5126
13490
13491
13492
13493
13494
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.7
N.D.
-1.4
-0.9
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
-0.1
N.D.
-2.1
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.4
N.D.
-0.8
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.0
N.D.
-0.7
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
-0.5
N.D.
+0.1
-0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.0
N.D.
-0.1
-0.1
growth on ypd
YPD
+0.1
-0.4
N.D.
-0.1
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
+0.1
N.D.
-0.3
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
+0.4
N.D.
-0.9
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.0
N.D.
-0.1
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
-0.0
N.D.
-0.5
+0.8
growth on oleic acid
YNB Glucose
+0.2
+0.2
N.D.
+0.5
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.5
N.D.
+0.5
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.5
N.D.
+0.3
+0.6
growth on oleic acid
YNB Oleic Acid
+0.0
+0.6
N.D.
+0.9
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.0
N.D.
+0.5
+1.1
growth on ricinoleic acid
YNB Glucose
+0.3
+0.1
N.D.
+0.3
+1.3
auxotrophy
YNB Glucose
+0.4
+0.4
N.D.
+0.6
+0.8
auxotrophy
Dropout Complete
+0.0
+0.7
N.D.
+0.8
+0.9
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
+0.9
N.D.
+1.0
+1.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
+0.6
N.D.
+1.4
+1.5
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