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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13493 and 13494 are separated by 123 nucleotides
13494 and 13495 are separated by 287 nucleotides
13495 and 13496 are separated by 658 nucleotides
13496 and 13497 are separated by 134 nucleotides
mRNA_5125: 13493 - Interpro Protein of unknown function (DUF3431), at 1,818,424 to 1,820,541
13493
mRNA_5126: 13494 - Hypothetical Protein, at 1,820,665 to 1,821,231
13494
mRNA_5127: 13495 - K07941 ARF6 ADP-ribosylation factor 6, at 1,821,519 to 1,822,822
13495
mRNA_5128: 13496 - K08342 ATG4 cysteine protease ATG4, at 1,823,481 to 1,827,071
13496
mRNA_5129: 13497 - Hypothetical Protein, at 1,827,206 to 1,828,600
13497
Group
Condition
mRNA
_5125
mRNA
_5126
mRNA
_5127
mRNA
_5128
mRNA
_5129
13493
13494
13495
13496
13497
ypd buoyancy
40 hrs No Buoyancy Separation
-2.1
-0.4
N.D.
-0.8
+0.7
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
+0.8
N.D.
-2.0
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.4
-0.9
N.D.
+0.3
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.4
N.D.
-1.5
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.7
+0.0
N.D.
-0.1
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.1
N.D.
-0.0
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.4
N.D.
-1.3
+0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.8
+0.1
N.D.
+0.1
+0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.9
+0.3
N.D.
-0.7
+1.4
growth on ypd
YPD
-0.1
+0.4
N.D.
+0.1
-0.2
growth on oleic acid
YNB Glucose
+0.5
+0.2
N.D.
+0.1
-0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.6
N.D.
-0.2
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
+0.1
N.D.
+0.2
+0.8
growth on ricinoleic acid
YNB Glucose
+0.3
+1.3
N.D.
-0.2
-0.6
auxotrophy
YNB Glucose 75mM Arginine
+0.5
+0.3
N.D.
-0.1
+0.2
growth on oleic acid
YNB Oleic Acid
+0.9
+0.1
N.D.
-0.1
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.5
+1.1
N.D.
-0.1
-0.5
auxotrophy
Dropout Complete
+0.8
+0.9
N.D.
-0.3
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.0
+1.2
N.D.
-0.3
-0.7
auxotrophy
YNB Glucose
+0.6
+0.8
N.D.
-0.3
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+1.4
+1.5
N.D.
-0.2
-0.7
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