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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13496 and 13497 are separated by 134 nucleotides
13497 and 13498 are separated by 662 nucleotides
13498 and 13499 are separated by 166 nucleotides
13499 and 13500 are separated by 346 nucleotides
mRNA_5128: 13496 - K08342 ATG4 cysteine protease ATG4, at 1,823,481 to 1,827,071
13496
mRNA_5129: 13497 - Hypothetical Protein, at 1,827,206 to 1,828,600
13497
mRNA_5130: 13498 - Hypothetical Protein, at 1,829,263 to 1,829,910
13498
mRNA_5131: 13499 - Hypothetical Protein, at 1,830,077 to 1,833,638
13499
mRNA_5132: 13500 - K03025 RPC6, POLR3F DNA-directed RNA polymerase III subunit RPC6, at 1,833,985 to 1,836,173
13500
Group
Condition
mRNA
_5128
mRNA
_5129
mRNA
_5130
mRNA
_5131
mRNA
_5132
13496
13497
13498
13499
13500
facs on lipid accumulation
Sorted No BODIPY Gate
-1.5
+0.2
N.D.
+0.3
-0.6
ypd buoyancy
40 hrs No Buoyancy Separation
-0.8
+0.7
N.D.
+0.0
-1.5
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.2
N.D.
+0.2
-1.8
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-0.7
N.D.
+0.3
-0.8
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.7
N.D.
+0.4
-0.8
facs on lipid accumulation
Sorted High BODIPY Gate
-2.0
-0.1
N.D.
+0.5
+0.5
auxotrophy
Dropout Complete
-0.3
-0.3
N.D.
+0.1
-0.6
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.5
N.D.
-0.2
-0.0
growth on ricinoleic acid
YNB Glucose
-0.2
-0.6
N.D.
+0.1
-0.2
growth on oleic acid
YNB Glucose
+0.1
-0.4
N.D.
+0.1
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.0
N.D.
-0.0
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.4
N.D.
-0.1
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.0
N.D.
+0.4
-0.5
growth on ypd
YPD
+0.1
-0.2
N.D.
+0.0
-0.1
growth on oleic acid
YNB Oleic Acid
-0.1
-0.0
N.D.
+0.1
+0.0
auxotrophy
YNB Glucose
-0.3
+0.1
N.D.
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-1.3
+0.7
N.D.
+0.1
+0.9
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.6
N.D.
+0.2
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.8
N.D.
+0.0
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.7
+1.4
N.D.
+0.1
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
+0.3
N.D.
+0.5
+0.1
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