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Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13498 and 13499 are separated by 166 nucleotides
13499 and 13500 are separated by 346 nucleotides
13500 and 13501 are separated by 118 nucleotides
13501 and 13502 are separated by 471 nucleotides
mRNA_5130: 13498 - Hypothetical Protein, at 1,829,263 to 1,829,910
13498
mRNA_5131: 13499 - Hypothetical Protein, at 1,830,077 to 1,833,638
13499
mRNA_5132: 13500 - K03025 RPC6, POLR3F DNA-directed RNA polymerase III subunit RPC6, at 1,833,985 to 1,836,173
13500
mRNA_5133: 13501 - Interpro Proteasome assembly chaperone 4, at 1,836,292 to 1,836,837
13501
mRNA_5134: 13502 - Hypothetical Protein, at 1,837,309 to 1,837,612
13502
Group
Condition
mRNA
_5130
mRNA
_5131
mRNA
_5132
mRNA
_5133
mRNA
_5134
13498
13499
13500
13501
13502
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.0
-1.5
-0.6
-0.6
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.2
-1.8
+0.5
+0.4
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.0
-0.2
+0.0
-0.4
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.2
-0.0
+0.3
+0.0
auxotrophy
Dropout Complete
N.D.
+0.1
-0.6
+0.2
+0.4
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.1
+0.2
+0.1
-0.0
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.4
-0.5
+0.3
+0.0
growth on ypd
YPD
N.D.
+0.0
-0.1
+0.6
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.3
-0.6
+0.5
+0.2
growth on ricinoleic acid
YNB Glucose
N.D.
+0.1
-0.2
-0.0
+0.6
auxotrophy
YNB Glucose
N.D.
+0.2
+0.1
+0.0
+0.2
growth on oleic acid
YNB Glucose
N.D.
+0.1
-0.2
+0.3
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.2
-0.3
+0.4
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.4
-0.8
+0.6
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.1
+0.3
+0.4
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.0
-0.1
+0.6
+0.5
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.5
+0.5
+0.2
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.5
+0.1
+0.9
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.3
-0.8
+0.4
+1.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.1
+0.9
+0.1
+0.4
growth on oleic acid
YNB Oleic Acid
N.D.
+0.1
+0.0
+1.0
+0.5
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