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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13502 and 13503 are separated by 485 nucleotides
13503 and 13504 are separated by 249 nucleotides
13504 and 13505 are separated by 356 nucleotides
13505 and 13506 are separated by 148 nucleotides
mRNA_5134: 13502 - Hypothetical Protein, at 1,837,309 to 1,837,612
13502
mRNA_5135: 13503 - KOG2112 Lysophospholipase, at 1,838,098 to 1,839,566
13503
mRNA_5136: 13504 - BLAST MYB DNA-binding domain protein [Macrophomina phaseoli..., at 1,839,816 to 1,840,478
13504
mRNA_5137: 13505 - K13342 PEX5, PXR1 peroxin-5, at 1,840,835 to 1,843,889
13505
mRNA_5138: 13506 - K20359 RABAC1, PRAF1 PRA1 family protein 1, at 1,844,038 to 1,845,081
13506
Group
Condition
mRNA
_5134
mRNA
_5135
mRNA
_5136
mRNA
_5137
mRNA
_5138
13502
13503
13504
13505
13506
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
+0.1
-1.7
-0.5
-0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
-0.2
-0.2
-1.4
-0.3
growth on oleic acid
YNB Oleic Acid
+0.5
-0.1
-0.5
-2.2
+0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
+0.0
-0.3
-0.8
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.1
-0.3
-0.4
-0.3
growth on ypd
YPD
-0.2
-0.0
-0.6
-0.2
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.4
-0.7
-0.2
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.1
-0.2
+0.1
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.2
+0.1
+0.2
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.4
+0.0
+0.2
+0.2
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.1
+0.2
+0.5
-1.4
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.3
-0.0
-0.2
+0.6
auxotrophy
YNB Glucose
+0.2
+0.3
-0.0
-0.1
+0.4
growth on oleic acid
YNB Glucose
+0.4
+0.3
-0.2
-0.1
+0.5
auxotrophy
YNB Glucose 75mM Methionine
+0.0
+0.1
-0.0
+0.3
+0.5
auxotrophy
YNB Glucose 75mM Arginine
+0.4
+0.5
-0.0
-0.1
+0.4
auxotrophy
Dropout Complete
+0.4
+0.2
-0.0
+0.3
+0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.5
+0.8
+0.3
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
+0.6
+0.9
-0.1
-0.2
growth on ricinoleic acid
YNB Glucose
+0.6
+0.3
+0.8
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
+0.5
+1.4
+0.3
-0.3
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