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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13504 and 13505 are separated by 356 nucleotides
13505 and 13506 are separated by 148 nucleotides
13506 and 13507 are separated by 189 nucleotides
13507 and 13508 are separated by 282 nucleotides
mRNA_5136: 13504 - BLAST MYB DNA-binding domain protein [Macrophomina phaseoli..., at 1,839,816 to 1,840,478
13504
mRNA_5137: 13505 - K13342 PEX5, PXR1 peroxin-5, at 1,840,835 to 1,843,889
13505
mRNA_5138: 13506 - K20359 RABAC1, PRAF1 PRA1 family protein 1, at 1,844,038 to 1,845,081
13506
mRNA_5139: 13507 - KOG1944 Peroxisomal membrane protein MPV17 and related proteins, at 1,845,271 to 1,846,302
13507
mRNA_5140: 13508 - HMMPfam-GDSL-like Lipase/Acylhydrolase-PF00657,SUPERFAMILY--SSF52266, at 1,846,585 to 1,847,965
13508
Group
Condition
mRNA
_5136
mRNA
_5137
mRNA
_5138
mRNA
_5139
mRNA
_5140
13504
13505
13506
13507
13508
ypd buoyancy
40 hrs No Buoyancy Separation
-1.7
-0.5
-0.6
+0.2
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-1.4
-0.3
+0.3
-0.3
growth on oleic acid
YNB Oleic Acid
-0.5
-2.2
+0.6
+0.3
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
-0.4
-0.3
-0.0
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
-1.4
+0.1
+0.3
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.7
-0.2
+0.0
+0.1
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.8
+0.1
+0.0
+0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.1
+0.4
-0.3
-0.3
growth on ypd
YPD
-0.6
-0.2
+0.1
+0.6
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.2
-0.3
-0.2
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.2
+0.6
-0.2
-0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.1
+0.4
+0.2
-0.1
growth on oleic acid
YNB Glucose
-0.2
-0.1
+0.5
+0.1
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.2
+0.4
+0.1
-0.3
growth on ricinoleic acid
YNB Glucose
+0.8
-0.1
+0.2
+0.3
-0.3
auxotrophy
YNB Glucose
-0.0
-0.1
+0.4
+0.3
+0.2
auxotrophy
Dropout Complete
-0.0
+0.3
+0.5
+0.3
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.9
-0.1
-0.2
+0.2
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.8
+0.3
-0.1
+0.1
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.3
+0.5
+0.6
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.4
+0.3
-0.3
+0.1
+0.3
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