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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13509 and 13510 are separated by 952 nucleotides
13510 and 13511 are separated by 1116 nucleotides
13511 and 13512 are separated by 854 nucleotides
13512 and 13513 are separated by 449 nucleotides
mRNA_5141: 13509 - K12198 CHMP5, VPS60 charged multivesicular body protein 5, at 1 to 752
13509
mRNA_5142: 13510 - K13577 SLC25A10, DIC solute carrier family 25 (mitochondrial dicarboxylate transporter), member 10, at 1,705 to 3,095
13510
mRNA_5143: 13511 - K12763 SOK2 protein SOK2, at 4,212 to 7,292
13511
mRNA_5144: 13512 - BLAST putative mit domain-containing protein [Erysiphe neca..., at 8,147 to 8,373
13512
mRNA_5145: 13513 - Hypothetical Protein, at 8,823 to 11,115
13513
Group
Condition
mRNA
_5141
mRNA
_5142
mRNA
_5143
mRNA
_5144
mRNA
_5145
13509
13510
13511
13512
13513
ypd buoyancy
40 hrs No Buoyancy Separation
-1.0
-0.5
-0.2
-0.9
-0.8
ypd buoyancy
40 hrs Median Buoyancy
-0.3
-0.2
-0.1
-0.7
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.3
-0.3
-0.1
-0.2
-0.0
growth on ypd
YPD
+0.4
+0.1
-0.1
-0.3
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.1
-0.1
+0.5
+0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+1.4
+0.1
-0.2
+0.2
auxotrophy
Dropout Complete
-0.5
+0.1
+0.1
+1.2
+0.6
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.2
-0.1
+1.6
+0.5
auxotrophy
YNB Glucose
-0.3
-0.2
+0.1
+1.5
+0.5
growth on ricinoleic acid
YNB Glucose
+0.7
-0.2
+0.1
+0.9
+0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.7
+0.6
-0.0
+1.1
-0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.0
+0.0
-0.0
+1.5
+0.5
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
+0.7
+0.5
+0.4
+0.3
growth on oleic acid
YNB Glucose
+0.5
+0.1
+0.1
+0.9
+0.8
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
-0.3
-0.1
+2.0
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.9
-0.3
-0.3
+2.0
+1.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.7
+0.0
+0.0
+2.5
+0.4
growth on oleic acid
YNB Oleic Acid
+1.1
+0.2
+0.0
+1.8
+1.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.0
-0.1
+0.1
+2.6
+0.9
facs on lipid accumulation
Sorted High BODIPY Gate
+0.6
+1.0
+0.3
+1.7
+1.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+1.2
-0.1
-0.0
+2.7
+1.8
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