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Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13516 and 13517 are separated by 439 nucleotides
13517 and 13518 are separated by 281 nucleotides
13518 and 13519 are separated by 1563 nucleotides
13519 and 13520 are separated by 575 nucleotides
mRNA_5148: 13516 - K17918 SNX3_12 sorting nexin-3/12, at 17,697 to 18,440
13516
mRNA_5149: 13517 - Hypothetical Protein, at 18,880 to 20,047
13517
mRNA_5150: 13518 - Hypothetical Protein, at 20,329 to 21,379
13518
mRNA_5151: 13519 - HMMPfam-SUR7/PalI family-PF06687, at 22,943 to 24,220
13519
mRNA_5152: 13520 - HMMPfam-Domain of unknown function (DUF4336)-PF14234,SUPERFAMILY--SSF56281, at 24,796 to 26,164
13520
Group
Condition
mRNA
_5148
mRNA
_5149
mRNA
_5150
mRNA
_5151
mRNA
_5152
13516
13517
13518
13519
13520
ypd buoyancy
40 hrs No Buoyancy Separation
-1.1
+0.2
-0.9
-0.4
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.7
-0.1
+0.3
-0.9
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.0
-0.3
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-1.0
+0.0
-0.1
+0.5
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.9
-0.1
-0.1
+0.5
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.6
-0.3
+0.0
+0.3
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.0
-0.6
+0.2
+0.1
growth on ypd
YPD
-0.0
+0.1
-0.4
+0.0
+0.3
auxotrophy
Dropout Complete
-0.7
+0.2
-0.0
+0.4
+0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.2
-0.1
+0.2
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
+0.3
+0.3
+0.4
+0.0
growth on ricinoleic acid
YNB Glucose
+0.3
-0.2
+0.2
+0.6
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.1
-0.1
+0.7
+0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.3
+0.1
+0.1
+0.7
+0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.4
-0.0
+0.7
+0.1
auxotrophy
YNB Glucose
+0.0
+0.1
-0.2
+0.7
+0.4
growth on oleic acid
YNB Glucose
+0.4
+0.3
+0.4
+0.5
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.8
-0.0
+0.1
+1.0
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
+0.2
+0.0
+1.2
+0.2
growth on oleic acid
YNB Oleic Acid
+0.7
+0.3
+0.1
+1.1
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
+0.6
+0.1
+1.9
+0.7
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