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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13520 and 13521 are separated by 225 nucleotides
13521 and 13522 are separated by 747 nucleotides
13522 and 13523 are separated by 461 nucleotides
13523 and 13524 are separated by 812 nucleotides
mRNA_5152: 13520 - HMMPfam-Domain of unknown function (DUF4336)-PF14234,SUPERFAMILY--SSF56281, at 24,796 to 26,164
13520
mRNA_5153: 13521 - HMMPfam-Secretory lipase-PF03583,PIRSF--PIRSF029171,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,SUPERFAMILY--SSF53474, at 26,390 to 28,027
13521
mRNA_5154: 13522 - HMMPfam-Beta-lactamase superfamily domain-PF12706,SUPERFAMILY--SSF56281, at 28,775 to 30,256
13522
mRNA_5155: 13523 - BLAST unknown [Tremella fuciformis], at 30,718 to 32,151
13523
mRNA_5156: 13524 - K00108 betA, CHDH choline dehydrogenase, at 32,964 to 35,897
13524
Group
Condition
mRNA
_5152
mRNA
_5153
mRNA
_5154
mRNA
_5155
mRNA
_5156
13520
13521
13522
13523
13524
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
-1.0
-0.2
+0.1
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.4
-0.2
-0.4
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.7
-0.2
-0.2
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
+0.0
+0.5
-1.2
+0.5
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.3
-0.1
+0.4
-0.0
growth on ypd
YPD
+0.3
+0.0
+0.2
+0.2
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.1
+0.3
+0.0
+0.2
growth on ricinoleic acid
YNB Glucose
-0.1
+0.6
-0.2
+0.3
+0.1
auxotrophy
Dropout Complete
+0.4
+0.4
-0.4
+0.4
+0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.0
-0.1
+0.8
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.4
+0.1
+0.7
+0.0
growth on oleic acid
YNB Glucose
+0.2
+0.6
+0.3
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.7
+0.3
+0.3
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.5
+0.1
+0.7
+0.2
auxotrophy
YNB Glucose
+0.4
+0.4
+0.1
+0.7
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.7
+0.7
+0.3
+0.0
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
+0.8
+0.3
+1.0
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+0.6
+0.6
+0.6
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
+0.8
+0.3
+0.6
+0.2
growth on oleic acid
YNB Oleic Acid
+0.2
+0.6
+0.6
+0.8
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.8
+0.9
+1.4
-0.1
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