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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13522 and 13523 are separated by 461 nucleotides
13523 and 13524 are separated by 812 nucleotides
13524 and 13525 are separated by 420 nucleotides
13525 and 13526 are separated by 965 nucleotides
mRNA_5154: 13522 - HMMPfam-Beta-lactamase superfamily domain-PF12706,SUPERFAMILY--SSF56281, at 28,775 to 30,256
13522
mRNA_5155: 13523 - BLAST unknown [Tremella fuciformis], at 30,718 to 32,151
13523
mRNA_5156: 13524 - K00108 betA, CHDH choline dehydrogenase, at 32,964 to 35,897
13524
mRNA_5157: 13525 - K11976 RNF216 TRIAD3 E3 ubiquitin-protein ligase RNF216, at 36,318 to 38,711
13525
mRNA_5158: 13526 - K15128 MED6 mediator of RNA polymerase II transcription subunit 6, at 39,677 to 40,567
13526
Group
Condition
mRNA
_5154
mRNA
_5155
mRNA
_5156
mRNA
_5157
mRNA
_5158
13522
13523
13524
13525
13526
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
-1.2
+0.5
-0.5
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.4
-0.1
+0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.2
-0.0
-0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.1
-0.2
+0.2
N.D.
auxotrophy
Dropout Complete
-0.4
+0.4
+0.0
-0.0
N.D.
growth on ricinoleic acid
YNB Glucose
-0.2
+0.3
+0.1
+0.1
N.D.
growth on ypd
YPD
+0.2
+0.2
-0.0
+0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.4
-0.0
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.7
+0.0
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.7
+0.2
-0.2
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.0
+0.2
+0.4
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.8
-0.0
+0.3
N.D.
growth on oleic acid
YNB Glucose
+0.3
+0.2
+0.3
+0.2
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
+0.0
+0.1
+0.6
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
+0.3
+0.3
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+0.6
+0.2
-0.1
N.D.
auxotrophy
YNB Glucose
+0.1
+0.7
+0.1
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.6
+0.6
+0.2
-0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
+1.0
-0.1
+0.2
N.D.
growth on oleic acid
YNB Oleic Acid
+0.6
+0.8
+0.3
+0.3
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.9
+1.4
-0.1
+0.3
N.D.
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