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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13523 and 13524 are separated by 812 nucleotides
13524 and 13525 are separated by 420 nucleotides
13525 and 13526 are separated by 965 nucleotides
13526 and 13527 are separated by 822 nucleotides
mRNA_5155: 13523 - BLAST unknown [Tremella fuciformis], at 30,718 to 32,151
13523
mRNA_5156: 13524 - K00108 betA, CHDH choline dehydrogenase, at 32,964 to 35,897
13524
mRNA_5157: 13525 - K11976 RNF216 TRIAD3 E3 ubiquitin-protein ligase RNF216, at 36,318 to 38,711
13525
mRNA_5158: 13526 - K15128 MED6 mediator of RNA polymerase II transcription subunit 6, at 39,677 to 40,567
13526
mRNA_5159: 13527 - Hypothetical Protein, at 41,390 to 42,543
13527
Group
Condition
mRNA
_5155
mRNA
_5156
mRNA
_5157
mRNA
_5158
mRNA
_5159
13523
13524
13525
13526
13527
ypd buoyancy
40 hrs No Buoyancy Separation
-1.2
+0.5
-0.5
N.D.
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.4
-0.1
+0.1
N.D.
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.0
-0.1
N.D.
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.2
+0.2
N.D.
-0.1
auxotrophy
Dropout Complete
+0.4
+0.0
-0.0
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
+0.3
+0.1
N.D.
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
+0.1
+0.6
N.D.
-0.2
growth on oleic acid
YNB Glucose
+0.2
+0.3
+0.2
N.D.
-0.1
growth on ricinoleic acid
YNB Glucose
+0.3
+0.1
+0.1
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.7
+0.2
-0.2
N.D.
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.2
+0.4
N.D.
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
-0.0
+0.3
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.6
+0.2
-0.1
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.7
+0.0
-0.1
N.D.
+0.3
growth on oleic acid
YNB Oleic Acid
+0.8
+0.3
+0.3
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.6
+0.2
-0.2
N.D.
+0.3
growth on ypd
YPD
+0.2
-0.0
+0.1
N.D.
+0.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.0
-0.1
+0.2
N.D.
-0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.8
-0.0
+0.3
N.D.
+0.0
auxotrophy
YNB Glucose
+0.7
+0.1
+0.2
N.D.
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+1.4
-0.1
+0.3
N.D.
+0.1
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