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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13524 and 13525 are separated by 420 nucleotides
13525 and 13526 are separated by 965 nucleotides
13526 and 13527 are separated by 822 nucleotides
13527 and 13528 are separated by 545 nucleotides
mRNA_5156: 13524 - K00108 betA, CHDH choline dehydrogenase, at 32,964 to 35,897
13524
mRNA_5157: 13525 - K11976 RNF216 TRIAD3 E3 ubiquitin-protein ligase RNF216, at 36,318 to 38,711
13525
mRNA_5158: 13526 - K15128 MED6 mediator of RNA polymerase II transcription subunit 6, at 39,677 to 40,567
13526
mRNA_5159: 13527 - Hypothetical Protein, at 41,390 to 42,543
13527
mRNA_5160: 13528 - Hypothetical Protein, at 43,089 to 43,847
13528
Group
Condition
mRNA
_5156
mRNA
_5157
mRNA
_5158
mRNA
_5159
mRNA
_5160
13524
13525
13526
13527
13528
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.3
N.D.
+0.1
-0.9
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
-0.5
N.D.
-0.2
-0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.1
N.D.
-0.0
-0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.2
N.D.
-0.0
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.2
N.D.
+0.3
-0.6
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.1
N.D.
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.2
N.D.
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
-0.1
N.D.
+0.3
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
+0.1
N.D.
-0.2
-0.2
growth on oleic acid
YNB Oleic Acid
+0.3
+0.3
N.D.
-0.4
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+0.3
N.D.
+0.2
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.2
N.D.
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.1
N.D.
+0.1
-0.2
growth on ricinoleic acid
YNB Glucose
+0.1
+0.1
N.D.
+0.1
-0.1
auxotrophy
Dropout Complete
+0.0
-0.0
N.D.
-0.1
+0.3
growth on oleic acid
YNB Glucose
+0.3
+0.2
N.D.
-0.1
-0.0
auxotrophy
YNB Glucose
+0.1
+0.2
N.D.
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.3
N.D.
+0.0
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.4
N.D.
+0.0
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.6
N.D.
-0.2
+0.1
growth on ypd
YPD
-0.0
+0.1
N.D.
+0.7
+0.7
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