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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13525 and 13526 are separated by 965 nucleotides
13526 and 13527 are separated by 822 nucleotides
13527 and 13528 are separated by 545 nucleotides
13528 and 13529 are separated by 1069 nucleotides
mRNA_5157: 13525 - K11976 RNF216 TRIAD3 E3 ubiquitin-protein ligase RNF216, at 36,318 to 38,711
13525
mRNA_5158: 13526 - K15128 MED6 mediator of RNA polymerase II transcription subunit 6, at 39,677 to 40,567
13526
mRNA_5159: 13527 - Hypothetical Protein, at 41,390 to 42,543
13527
mRNA_5160: 13528 - Hypothetical Protein, at 43,089 to 43,847
13528
mRNA_5161: 13529 - Hypothetical Protein, at 44,917 to 45,595
13529
Group
Condition
mRNA
_5157
mRNA
_5158
mRNA
_5159
mRNA
_5160
mRNA
_5161
13525
13526
13527
13528
13529
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
N.D.
-0.2
-0.4
-2.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
N.D.
+0.1
-0.9
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
N.D.
-0.2
-0.2
-0.4
growth on oleic acid
YNB Oleic Acid
+0.3
N.D.
-0.4
-0.1
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
N.D.
-0.0
-0.4
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
N.D.
+0.2
-0.4
-0.4
growth on oleic acid
YNB Glucose
+0.2
N.D.
-0.1
-0.0
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
N.D.
+0.3
-0.6
+0.2
growth on ricinoleic acid
YNB Glucose
+0.1
N.D.
+0.1
-0.1
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.2
N.D.
-0.1
-0.0
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.1
N.D.
+0.1
-0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
N.D.
-0.0
-0.5
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
N.D.
+0.1
-0.2
+0.3
auxotrophy
Dropout Complete
-0.0
N.D.
-0.1
+0.3
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.6
N.D.
-0.2
+0.1
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
N.D.
-0.1
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
N.D.
+0.3
-0.2
+0.7
ypd buoyancy
40 hrs Low Buoyancy
+0.4
N.D.
+0.0
-0.1
+0.3
auxotrophy
YNB Glucose
+0.2
N.D.
+0.1
-0.1
+0.6
auxotrophy
YNB Glucose 75mM Arginine
+0.3
N.D.
+0.0
+0.2
+0.4
growth on ypd
YPD
+0.1
N.D.
+0.7
+0.7
+0.5
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