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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13532 and 13533 are separated by 504 nucleotides
13533 and 13534 are separated by 648 nucleotides
13534 and 13535 are separated by 561 nucleotides
13535 and 13536 are separated by 1463 nucleotides
mRNA_5164: 13532 - HMMPfam-Beta-lactamase superfamily domain-PF12706,SMART-Metallo-beta-lactamase superfamily-SM00849,SUPERFAMILY--SSF56281, at 50,171 to 51,821
13532
mRNA_5165: 13533 - Hypothetical Protein, at 52,326 to 52,658
13533
mRNA_5166: 13534 - KOG0590 Checkpoint kinase and related serine/threonine protein kinases, at 53,307 to 58,220
13534
mRNA_5167: 13535 - Hypothetical Protein, at 58,782 to 59,470
13535
mRNA_5168: 13536 - SUPERFAMILY--SSF46955, at 60,934 to 62,324
13536
Group
Condition
mRNA
_5164
mRNA
_5165
mRNA
_5166
mRNA
_5167
mRNA
_5168
13532
13533
13534
13535
13536
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.3
+0.1
+0.0
-1.7
+0.0
growth on oleic acid
YNB Oleic Acid
+0.2
-0.0
+0.1
-1.4
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.1
+0.0
-0.5
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.8
+0.0
+0.2
-0.9
+0.6
ypd buoyancy
40 hrs High Buoyancy
-0.5
-0.1
-0.1
-0.1
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
+0.0
-0.1
-0.0
+0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.1
-0.2
+0.1
-0.2
growth on ricinoleic acid
YNB Glucose
-0.2
+0.0
+0.1
-0.1
+0.2
auxotrophy
Dropout Complete
-0.6
+0.0
+0.4
+0.5
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.5
+0.1
+0.8
-0.4
+0.3
growth on ypd
YPD
+0.4
+0.0
+0.0
-0.3
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.0
-0.0
+0.0
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.5
+0.0
+0.6
-0.3
+0.7
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.0
+0.1
+0.1
+0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.5
-0.1
+0.4
+0.5
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.0
+0.1
+0.6
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.0
+0.5
+0.4
+0.2
growth on oleic acid
YNB Glucose
+0.3
-0.0
+0.3
+0.1
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
-0.0
+0.2
+0.4
+0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.3
+0.5
-0.0
+0.6
auxotrophy
YNB Glucose
-0.5
-0.1
+0.6
+1.0
+0.5
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