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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13534 and 13535 are separated by 561 nucleotides
13535 and 13536 are separated by 1463 nucleotides
13536 and 13537 are separated by 234 nucleotides
13537 and 13538 are separated by 449 nucleotides
mRNA_5166: 13534 - KOG0590 Checkpoint kinase and related serine/threonine protein kinases, at 53,307 to 58,220
13534
mRNA_5167: 13535 - Hypothetical Protein, at 58,782 to 59,470
13535
mRNA_5168: 13536 - SUPERFAMILY--SSF46955, at 60,934 to 62,324
13536
mRNA_5169: 13537 - Hypothetical Protein, at 62,559 to 64,260
13537
mRNA_5170: 13538 - Hypothetical Protein, at 64,710 to 65,306
13538
Group
Condition
mRNA
_5166
mRNA
_5167
mRNA
_5168
mRNA
_5169
mRNA
_5170
13534
13535
13536
13537
13538
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-1.7
+0.0
-1.2
-0.6
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.9
+0.6
-0.8
-1.7
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
-0.5
-0.2
+0.2
-1.4
growth on oleic acid
YNB Oleic Acid
+0.1
-1.4
-0.0
-0.1
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
+0.0
+0.4
-0.3
-0.5
auxotrophy
Dropout Complete
+0.4
+0.5
-0.1
-0.2
-0.9
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.0
+0.4
-0.3
-0.3
growth on ricinoleic acid
YNB Glucose
+0.1
-0.1
+0.2
-0.1
-0.3
growth on oleic acid
YNB Glucose
+0.3
+0.1
+0.2
+0.0
-0.8
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.4
+0.5
-0.3
-0.9
auxotrophy
YNB Glucose 75mM Arginine
+0.4
+0.5
+0.3
+0.0
-1.3
auxotrophy
YNB Glucose 75mM Methionine
+0.5
+0.4
+0.2
-0.0
-1.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.8
-0.4
+0.3
-0.2
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.1
+0.3
-0.2
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.6
-0.3
-0.1
+0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.1
-0.2
-0.0
+1.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
-0.0
+0.6
+0.0
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.1
+0.4
-0.0
+1.0
growth on ypd
YPD
+0.0
-0.3
+0.3
-0.2
+1.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.6
-0.3
+0.7
-0.1
+0.6
auxotrophy
YNB Glucose
+0.6
+1.0
+0.5
-0.1
-0.3
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