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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13536 and 13537 are separated by 234 nucleotides
13537 and 13538 are separated by 449 nucleotides
13538 and 13539 are separated by 455 nucleotides
13539 and 13540 are separated by 1528 nucleotides
mRNA_5168: 13536 - SUPERFAMILY--SSF46955, at 60,934 to 62,324
13536
mRNA_5169: 13537 - Hypothetical Protein, at 62,559 to 64,260
13537
mRNA_5170: 13538 - Hypothetical Protein, at 64,710 to 65,306
13538
mRNA_5171: 13539 - KOG2262 Sexual differentiation process protein ISP4, at 65,762 to 68,577
13539
mRNA_5172: 13540 - BLAST similar to An11g07040 [Aspergillus kawachii IFO 4308], at 70,106 to 71,183
13540
Group
Condition
mRNA
_5168
mRNA
_5169
mRNA
_5170
mRNA
_5171
mRNA
_5172
13536
13537
13538
13539
13540
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-1.2
-0.6
-3.6
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.1
+0.4
-3.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
-0.3
-0.9
-2.3
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.6
-0.8
-1.7
-1.3
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
-0.3
-0.3
-2.5
+0.1
growth on oleic acid
YNB Oleic Acid
-0.0
-0.1
-0.4
-1.5
+0.0
auxotrophy
Dropout Complete
-0.1
-0.2
-0.9
-0.4
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.2
-1.4
-0.0
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.0
-1.0
-0.5
+0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.0
-1.3
-0.4
+0.1
growth on oleic acid
YNB Glucose
+0.2
+0.0
-0.8
-0.6
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.0
+1.1
-1.8
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-0.2
-0.2
-0.9
-0.0
growth on ricinoleic acid
YNB Glucose
+0.2
-0.1
-0.3
-0.7
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
-0.3
-0.5
-0.2
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.6
+0.0
-0.1
-0.9
-0.1
auxotrophy
YNB Glucose
+0.5
-0.1
-0.3
-0.3
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.7
-0.1
+0.6
-0.6
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.3
-0.2
+0.2
+0.4
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.4
-0.0
+1.0
+0.3
-0.0
growth on ypd
YPD
+0.3
-0.2
+1.5
+0.7
-0.1
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