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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13539 and 13540 are separated by 1528 nucleotides
13540 and 13541 are separated by 1645 nucleotides
13541 and 13542 are separated by 1180 nucleotides
13542 and 13543 are separated by 292 nucleotides
mRNA_5171: 13539 - KOG2262 Sexual differentiation process protein ISP4, at 65,762 to 68,577
13539
mRNA_5172: 13540 - BLAST similar to An11g07040 [Aspergillus kawachii IFO 4308], at 70,106 to 71,183
13540
mRNA_5173: 13541 - KOG1189 Global transcriptional regulator, cell division control protein, at 72,829 to 76,773
13541
mRNA_5174: 13542 - Hypothetical Protein, at 77,954 to 78,191
13542
mRNA_5175: 13543 - K08341 GABARAP, ATG8, LC3 GABA(A) receptor-associated protein, at 78,484 to 79,264
13543
Group
Condition
mRNA
_5171
mRNA
_5172
mRNA
_5173
mRNA
_5174
mRNA
_5175
13539
13540
13541
13542
13543
facs on lipid accumulation
Sorted High BODIPY Gate
-1.3
+0.3
-1.6
-0.1
-4.2
facs on lipid accumulation
Sorted No BODIPY Gate
-2.5
+0.1
-1.0
+0.2
-2.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.6
-0.1
+0.4
-0.1
-2.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-3.1
+0.1
-0.3
+0.7
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.9
-0.0
-0.4
-0.3
-0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
-3.6
+0.1
+1.5
+0.1
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-2.3
+0.0
-0.1
+0.8
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.9
-0.1
+0.6
-0.1
-0.8
ypd buoyancy
40 hrs Low Buoyancy
-1.8
-0.1
+0.1
+0.7
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.3
-0.0
-1.1
-0.0
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.4
+0.1
-1.2
+0.6
+0.3
growth on oleic acid
YNB Oleic Acid
-1.5
+0.0
+0.6
+0.4
-0.2
growth on ricinoleic acid
YNB Glucose
-0.7
+0.1
-0.4
+0.6
-0.1
auxotrophy
YNB Glucose
-0.3
+0.0
-1.2
+0.8
+0.3
auxotrophy
Dropout Complete
-0.4
+0.0
-0.4
+0.1
+0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.5
+0.0
-0.3
+1.0
-0.0
growth on oleic acid
YNB Glucose
-0.6
+0.1
+0.3
+0.7
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.4
+0.1
-0.5
+0.6
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
+0.1
+0.6
-0.9
+0.8
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.0
+0.7
+0.2
+0.3
growth on ypd
YPD
+0.7
-0.1
+1.1
+1.1
+0.2
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