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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13543 and 13544 are separated by 902 nucleotides
13544 and 13545 are separated by 325 nucleotides
13545 and 13546 are separated by 995 nucleotides
13546 and 13547 are separated by 514 nucleotides
mRNA_5175: 13543 - K08341 GABARAP, ATG8, LC3 GABA(A) receptor-associated protein, at 78,484 to 79,264
13543
mRNA_5176: 13544 - Hypothetical Protein, at 80,167 to 80,892
13544
mRNA_5177: 13545 - K07874 RAB1A Ras-related protein Rab-1A, at 81,218 to 82,188
13545
mRNA_5178: 13546 - BLAST chromatin remodeling factor subunit [Kalmanozyma ..., at 83,184 to 83,780
13546
mRNA_5179: 13547 - Hypothetical Protein, at 84,295 to 87,162
13547
Group
Condition
mRNA
_5175
mRNA
_5176
mRNA
_5177
mRNA
_5178
mRNA
_5179
13543
13544
13545
13546
13547
facs on lipid accumulation
Sorted High BODIPY Gate
-4.2
+0.3
N.D.
+0.2
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-2.3
+0.0
N.D.
-0.3
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-2.0
-0.0
N.D.
+0.0
+0.2
growth on oleic acid
YNB Oleic Acid
-0.2
-0.3
N.D.
-0.4
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.8
+0.1
N.D.
-0.5
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
+0.1
N.D.
-0.5
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.7
+0.1
N.D.
-0.2
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.2
N.D.
-0.2
-0.2
growth on oleic acid
YNB Glucose
-0.1
-0.0
N.D.
-0.4
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.2
N.D.
-0.1
-0.2
growth on ricinoleic acid
YNB Glucose
-0.1
-0.0
N.D.
-0.1
-0.0
auxotrophy
YNB Glucose
+0.3
-0.2
N.D.
-0.3
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.1
N.D.
-0.0
-0.2
growth on ypd
YPD
+0.2
-0.0
N.D.
+0.2
-0.4
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.0
N.D.
+0.0
-0.1
auxotrophy
Dropout Complete
+0.4
+0.1
N.D.
-0.2
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.1
N.D.
-0.1
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.0
N.D.
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+0.2
N.D.
-0.4
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.8
-0.2
N.D.
+0.0
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
+0.6
N.D.
-0.0
+0.3
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