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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13553 and 13554 are separated by 1090 nucleotides
13554 and 13555 are separated by 690 nucleotides
13555 and 13556 are separated by 792 nucleotides
13556 and 13557 are separated by 615 nucleotides
mRNA_5185: 13553 - K01210 E3.2.1.58 glucan 1,3-beta-glucosidase, at 97,438 to 100,447
13553
mRNA_5186: 13554 - KOG0023 Alcohol dehydrogenase, class V, at 101,538 to 103,195
13554
mRNA_5187: 13555 - KOG2533 Permease of the major facilitator superfamily, at 103,886 to 106,875
13555
mRNA_5188: 13556 - HMMPfam-Protein of unknown function (DUF3421)-PF11901,SMART-Repeats found in Drosophila proteins.-SM00696, at 107,668 to 108,466
13556
mRNA_5189: 13557 - K14290 XPO1, CRM1 exportin-1, at 109,082 to 113,752
13557
Group
Condition
mRNA
_5185
mRNA
_5186
mRNA
_5187
mRNA
_5188
mRNA
_5189
13553
13554
13555
13556
13557
auxotrophy
Dropout Complete
N.D.
+0.1
-0.5
-0.7
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.2
-0.4
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.4
-0.1
-0.4
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.4
-0.2
-0.2
N.D.
auxotrophy
YNB Glucose
N.D.
+0.0
-0.5
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.3
-0.4
-0.0
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.3
-0.8
+0.6
N.D.
growth on ricinoleic acid
YNB Glucose
N.D.
+0.0
-0.3
-0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.1
-0.5
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.3
-0.3
-0.5
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.3
-0.3
-0.5
N.D.
growth on oleic acid
YNB Oleic Acid
N.D.
+0.1
-0.2
-0.3
N.D.
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.1
-0.4
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.3
-0.1
+0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.5
+0.1
+0.2
N.D.
growth on ypd
YPD
N.D.
+0.1
-0.1
-0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.4
-0.0
+0.3
N.D.
growth on oleic acid
YNB Glucose
N.D.
+0.4
-0.3
-0.0
N.D.
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.1
-0.1
+0.2
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.2
+0.3
-0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.3
-0.2
+0.2
N.D.
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