Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 13553 and 13554 are separated by 1090 nucleotides13554 and 13555 are separated by 690 nucleotides13555 and 13556 are separated by 792 nucleotides13556 and 13557 are separated by 615 nucleotides mRNA_5185: 13553 - K01210 E3.2.1.58 glucan 1,3-beta-glucosidase, at 97,438 to 100,447 13553 mRNA_5186: 13554 - KOG0023 Alcohol dehydrogenase, class V, at 101,538 to 103,195 13554 mRNA_5187: 13555 - KOG2533 Permease of the major facilitator superfamily, at 103,886 to 106,875 13555 mRNA_5188: 13556 - HMMPfam-Protein of unknown function (DUF3421)-PF11901,SMART-Repeats found in Drosophila proteins.-SM00696, at 107,668 to 108,466 13556 mRNA_5189: 13557 - K14290 XPO1, CRM1 exportin-1, at 109,082 to 113,752 13557
Group Condition mRNA_5185 mRNA_5186 mRNA_5187 mRNA_5188 mRNA_5189
13553 13554 13555 13556 13557
auxotrophy Dropout Complete N.D. +0.1 -0.5 -0.7 N.D.
facs on lipid accumulation Sorted High BODIPY Gate N.D. -0.2 -0.4 -0.3 N.D.
buoyancy on lipid accumulation 40 hrs High Buoyancy N.D. -0.4 -0.1 -0.4 N.D.
buoyancy on lipid accumulation 40 hrs Low Buoyancy N.D. -0.4 -0.2 -0.2 N.D.
auxotrophy YNB Glucose N.D. +0.0 -0.5 -0.3 N.D.
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation N.D. -0.3 -0.4 -0.0 N.D.
ypd buoyancy 40 hrs No Buoyancy Separation N.D. -0.3 -0.8 +0.6 N.D.
growth on ricinoleic acid YNB Glucose N.D. +0.0 -0.3 -0.2 N.D.
growth on ricinoleic acid YNB Methylricinoleic Acid N.D. +0.1 -0.5 -0.1 N.D.
auxotrophy YNB Glucose 75mM Methionine N.D. +0.3 -0.3 -0.5 N.D.
growth on ricinoleic acid YNB Ricinoleic Acid N.D. +0.3 -0.3 -0.5 N.D.
growth on oleic acid YNB Oleic Acid N.D. +0.1 -0.2 -0.3 N.D.
auxotrophy YNB Glucose 75mM Arginine N.D. +0.1 -0.4 -0.1 N.D.
buoyancy on lipid accumulation 40 hrs Median Buoyancy N.D. -0.3 -0.1 +0.1 N.D.
facs on lipid accumulation Sorted Low BODIPY Gate N.D. -0.5 +0.1 +0.2 N.D.
growth on ypd YPD N.D. +0.1 -0.1 -0.1 N.D.
ypd buoyancy 40 hrs High Buoyancy N.D. -0.4 -0.0 +0.3 N.D.
growth on oleic acid YNB Glucose N.D. +0.4 -0.3 -0.0 N.D.
ypd buoyancy 40 hrs Median Buoyancy N.D. -0.1 -0.1 +0.2 N.D.
facs on lipid accumulation Sorted No BODIPY Gate N.D. -0.2 +0.3 -0.1 N.D.
ypd buoyancy 40 hrs Low Buoyancy N.D. +0.3 -0.2 +0.2 N.D.
remove
mRNA_5185
plot
remove
mRNA_5186
plot
remove
mRNA_5187
remove
mRNA_5188
plot
remove
mRNA_5189
plot