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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13557 and 13558 are separated by 385 nucleotides
13558 and 13559 are separated by 549 nucleotides
13559 and 13560 are separated by 121 nucleotides
13560 and 13561 are separated by 458 nucleotides
mRNA_5189: 13557 - K14290 XPO1, CRM1 exportin-1, at 109,082 to 113,752
13557
mRNA_5190: 13558 - KOG4157 beta-1,6-N-acetylglucosaminyltransferase, contains WSC domain, at 114,138 to 116,063
13558
mRNA_5191: 13559 - KOG4826 C-8,7 sterol isomerase, at 116,613 to 117,622
13559
mRNA_5192: 13560 - KOG2814 Transcription coactivator complex, P50 component (LigT RNA ligase/phosphodiesterase family), at 117,744 to 118,664
13560
mRNA_5193: 13561 - KOG0253 Synaptic vesicle transporter SV2 (major facilitator superfamily), at 119,123 to 121,882
13561
Group
Condition
mRNA
_5189
mRNA
_5190
mRNA
_5191
mRNA
_5192
mRNA
_5193
13557
13558
13559
13560
13561
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.1
-0.4
-0.7
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+0.1
-1.5
+0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
-0.1
-0.4
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-0.2
-0.1
-0.7
auxotrophy
Dropout Complete
N.D.
N.D.
-0.2
-0.7
+0.1
growth on oleic acid
YNB Glucose
N.D.
N.D.
+0.0
-1.0
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.2
-0.3
+0.2
growth on ypd
YPD
N.D.
N.D.
-0.4
+0.2
-0.1
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
-0.0
-0.2
-0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.1
-0.5
+0.4
auxotrophy
YNB Glucose
N.D.
N.D.
+0.1
-0.5
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
-0.2
+0.0
+0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
-0.0
-0.3
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
+0.2
-0.3
+0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.4
+0.4
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
+0.4
-0.9
+0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.1
+0.6
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.2
+1.5
-0.9
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+0.1
+0.5
+0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
-0.3
+0.7
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
+0.2
+1.0
+0.7
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