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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13558 and 13559 are separated by 549 nucleotides
13559 and 13560 are separated by 121 nucleotides
13560 and 13561 are separated by 458 nucleotides
13561 and 13562 are separated by 891 nucleotides
mRNA_5190: 13558 - KOG4157 beta-1,6-N-acetylglucosaminyltransferase, contains WSC domain, at 114,138 to 116,063
13558
mRNA_5191: 13559 - KOG4826 C-8,7 sterol isomerase, at 116,613 to 117,622
13559
mRNA_5192: 13560 - KOG2814 Transcription coactivator complex, P50 component (LigT RNA ligase/phosphodiesterase family), at 117,744 to 118,664
13560
mRNA_5193: 13561 - KOG0253 Synaptic vesicle transporter SV2 (major facilitator superfamily), at 119,123 to 121,882
13561
mRNA_5194: 13562 - K00002 AKR1A1, adh alcohol dehydrogenase (NADP+), at 122,774 to 124,635
13562
Group
Condition
mRNA
_5190
mRNA
_5191
mRNA
_5192
mRNA
_5193
mRNA
_5194
13558
13559
13560
13561
13562
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.1
-0.4
-0.7
+0.3
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
-0.4
-0.4
+0.1
growth on oleic acid
YNB Oleic Acid
N.D.
+0.1
-1.5
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.2
-0.3
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.2
+0.0
+0.1
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.2
-0.3
+0.2
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.2
-0.1
-0.7
+0.7
auxotrophy
Dropout Complete
N.D.
-0.2
-0.7
+0.1
+0.5
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.4
+0.4
+0.1
-0.3
growth on ypd
YPD
N.D.
-0.4
+0.2
-0.1
+0.3
growth on oleic acid
YNB Glucose
N.D.
+0.0
-1.0
+0.4
+0.6
growth on ricinoleic acid
YNB Glucose
N.D.
-0.0
-0.2
-0.1
+0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.1
+0.6
-0.1
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.4
-0.9
+0.6
+0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.1
-0.5
+0.4
+0.5
auxotrophy
YNB Glucose
N.D.
+0.1
-0.5
+0.2
+0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.1
+0.5
+0.1
-0.3
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.0
-0.3
+0.2
+0.6
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.3
+0.7
+0.3
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.2
+1.5
-0.9
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.2
+1.0
+0.7
-0.2
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