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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13560 and 13561 are separated by 458 nucleotides
13561 and 13562 are separated by 891 nucleotides
13562 and 13563 are separated by 697 nucleotides
13563 and 13564 are separated by 434 nucleotides
mRNA_5192: 13560 - KOG2814 Transcription coactivator complex, P50 component (LigT RNA ligase/phosphodiesterase family), at 117,744 to 118,664
13560
mRNA_5193: 13561 - KOG0253 Synaptic vesicle transporter SV2 (major facilitator superfamily), at 119,123 to 121,882
13561
mRNA_5194: 13562 - K00002 AKR1A1, adh alcohol dehydrogenase (NADP+), at 122,774 to 124,635
13562
mRNA_5195: 13563 - KOG0814 Glyoxylase, at 125,333 to 126,456
13563
mRNA_5196: 13564 - K17218 sqr sulfide-quinone oxidoreductase, at 126,891 to 128,997
13564
Group
Condition
mRNA
_5192
mRNA
_5193
mRNA
_5194
mRNA
_5195
mRNA
_5196
13560
13561
13562
13563
13564
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.9
+0.6
+0.1
-3.8
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
+0.2
-0.4
-1.7
-0.2
growth on oleic acid
YNB Oleic Acid
-1.5
+0.2
+0.3
+0.1
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+1.0
+0.7
-0.2
-2.4
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.4
-0.4
+0.1
+0.2
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
-0.7
+0.3
+0.5
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.7
+0.7
+0.2
-0.5
auxotrophy
Dropout Complete
-0.7
+0.1
+0.5
-0.0
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
+0.1
-0.3
+0.0
-0.6
ypd buoyancy
40 hrs Low Buoyancy
+0.4
+0.1
-0.3
-0.4
-0.1
auxotrophy
YNB Glucose
-0.5
+0.2
+0.5
+0.1
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
+0.2
-0.2
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+0.1
-0.2
-0.2
+0.5
growth on oleic acid
YNB Glucose
-1.0
+0.4
+0.6
+0.3
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.5
+0.4
+0.5
+0.3
-0.5
auxotrophy
YNB Glucose 75mM Methionine
-0.3
+0.2
+0.6
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.6
-0.1
-0.2
-0.1
+0.1
growth on ricinoleic acid
YNB Glucose
-0.2
-0.1
+0.5
+0.4
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+1.5
-0.9
+0.4
-0.6
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.7
+0.3
-0.1
-0.2
+0.1
growth on ypd
YPD
+0.2
-0.1
+0.3
+0.4
+0.1
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