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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13561 and 13562 are separated by 891 nucleotides
13562 and 13563 are separated by 697 nucleotides
13563 and 13564 are separated by 434 nucleotides
13564 and 13565 are separated by 117 nucleotides
mRNA_5193: 13561 - KOG0253 Synaptic vesicle transporter SV2 (major facilitator superfamily), at 119,123 to 121,882
13561
mRNA_5194: 13562 - K00002 AKR1A1, adh alcohol dehydrogenase (NADP+), at 122,774 to 124,635
13562
mRNA_5195: 13563 - KOG0814 Glyoxylase, at 125,333 to 126,456
13563
mRNA_5196: 13564 - K17218 sqr sulfide-quinone oxidoreductase, at 126,891 to 128,997
13564
mRNA_5197: 13565 - Hypothetical Protein, at 129,115 to 130,730
13565
Group
Condition
mRNA
_5193
mRNA
_5194
mRNA
_5195
mRNA
_5196
mRNA
_5197
13561
13562
13563
13564
13565
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.6
+0.1
-3.8
-0.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.4
-1.7
-0.2
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.7
-0.2
-2.4
+0.1
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.9
+0.4
-0.6
-0.0
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.3
-0.4
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.3
+0.0
-0.6
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.7
+0.7
+0.2
-0.5
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.4
+0.1
+0.2
+0.0
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.2
-0.1
+0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.3
-0.1
-0.2
+0.1
-0.2
auxotrophy
Dropout Complete
+0.1
+0.5
-0.0
-0.2
-0.2
auxotrophy
YNB Glucose
+0.2
+0.5
+0.1
-0.4
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.7
+0.3
+0.5
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.2
-0.2
+0.5
+0.2
growth on ypd
YPD
-0.1
+0.3
+0.4
+0.1
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.2
+0.1
+0.2
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.6
-0.1
-0.2
-0.1
growth on ricinoleic acid
YNB Glucose
-0.1
+0.5
+0.4
-0.2
-0.0
growth on oleic acid
YNB Oleic Acid
+0.2
+0.3
+0.1
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.4
+0.5
+0.3
-0.5
-0.0
growth on oleic acid
YNB Glucose
+0.4
+0.6
+0.3
-0.2
-0.0
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