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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13564 and 13565 are separated by 117 nucleotides
13565 and 13566 are separated by 681 nucleotides
13566 and 13567 are separated by 108 nucleotides
13567 and 13568 are separated by 303 nucleotides
mRNA_5196: 13564 - K17218 sqr sulfide-quinone oxidoreductase, at 126,891 to 128,997
13564
mRNA_5197: 13565 - Hypothetical Protein, at 129,115 to 130,730
13565
mRNA_5198: 13566 - KOG2614 Kynurenine 3-monooxygenase and related flavoprotein monooxygenases, at 131,412 to 133,498
13566
mRNA_5199: 13567 - K01210 E3.2.1.58 glucan 1,3-beta-glucosidase, at 133,607 to 137,030
13567
mRNA_5200: 13568 - Hypothetical Protein, at 137,334 to 138,235
13568
Group
Condition
mRNA
_5196
mRNA
_5197
mRNA
_5198
mRNA
_5199
mRNA
_5200
13564
13565
13566
13567
13568
auxotrophy
YNB Glucose
-0.4
-0.2
+0.4
-0.2
-0.3
growth on oleic acid
YNB Glucose
-0.2
-0.0
-0.1
-0.4
+0.0
auxotrophy
Dropout Complete
-0.2
-0.2
+0.1
+0.1
-0.3
growth on ricinoleic acid
YNB Glucose
-0.2
-0.0
+0.1
-0.1
-0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.5
-0.0
+0.4
-0.1
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.1
+0.4
-0.3
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
-0.1
+0.4
+0.3
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.3
-0.1
+0.4
+0.1
growth on oleic acid
YNB Oleic Acid
-0.1
-0.1
+0.1
+0.2
+0.1
growth on ypd
YPD
+0.1
-0.3
+0.0
+0.0
+0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.2
+0.0
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.6
+0.1
+0.1
+0.7
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
+0.1
+0.3
+0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.2
+0.0
+0.2
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.2
+0.0
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.1
+0.2
+0.6
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.1
+0.3
+0.2
+0.6
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.1
+0.6
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
+0.2
-0.0
+0.5
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.2
+0.2
+0.9
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.2
+0.6
+0.4
+0.1
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