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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13567 and 13568 are separated by 303 nucleotides
13568 and 13569 are separated by 769 nucleotides
13569 and 13570 are separated by 307 nucleotides
13570 and 13571 are separated by 383 nucleotides
mRNA_5199: 13567 - K01210 E3.2.1.58 glucan 1,3-beta-glucosidase, at 133,607 to 137,030
13567
mRNA_5200: 13568 - Hypothetical Protein, at 137,334 to 138,235
13568
mRNA_5201: 13569 - K02304 MET8 precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase, at 139,005 to 139,988
13569
mRNA_5202: 13570 - K02874 RP-L14, MRPL14, rplN large subunit ribosomal protein L14, at 140,296 to 141,028
13570
mRNA_5203: 13571 - K06709 KDM4, JMJD2, JHDM3 jumonji domain-containing protein 2, at 141,412 to 145,870
13571
Group
Condition
mRNA
_5199
mRNA
_5200
mRNA
_5201
mRNA
_5202
mRNA
_5203
13567
13568
13569
13570
13571
auxotrophy
YNB Glucose
-0.2
-0.3
-3.1
N.D.
+0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.2
-2.7
N.D.
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
+0.1
-3.4
N.D.
+0.3
growth on ricinoleic acid
YNB Glucose
-0.1
-0.3
-2.0
N.D.
+0.1
growth on oleic acid
YNB Glucose
-0.4
+0.0
-2.1
N.D.
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.0
-2.3
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.7
-0.0
-2.6
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
-0.2
-1.9
N.D.
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.1
-1.7
N.D.
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
-0.1
-1.3
N.D.
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.1
-0.8
N.D.
-0.2
growth on ypd
YPD
+0.0
+0.4
-0.8
N.D.
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.1
-0.4
N.D.
-0.0
growth on oleic acid
YNB Oleic Acid
+0.2
+0.1
-0.7
N.D.
+0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.2
+0.5
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.9
-0.1
-0.4
N.D.
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.6
-0.5
N.D.
+0.3
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.3
+0.3
N.D.
-0.1
auxotrophy
Dropout Complete
+0.1
-0.3
+1.0
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.6
-0.3
+0.7
N.D.
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.4
+0.1
+0.7
N.D.
+0.0
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