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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13569 and 13570 are separated by 307 nucleotides
13570 and 13571 are separated by 383 nucleotides
13571 and 13572 are separated by 401 nucleotides
13572 and 13573 are separated by 1211 nucleotides
mRNA_5201: 13569 - K02304 MET8 precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase, at 139,005 to 139,988
13569
mRNA_5202: 13570 - K02874 RP-L14, MRPL14, rplN large subunit ribosomal protein L14, at 140,296 to 141,028
13570
mRNA_5203: 13571 - K06709 KDM4, JMJD2, JHDM3 jumonji domain-containing protein 2, at 141,412 to 145,870
13571
mRNA_5204: 13572 - Hypothetical Protein, at 146,272 to 147,091
13572
mRNA_5205: 13573 - KOG0001 Ubiquitin and ubiquitin-like proteins, at 148,303 to 148,964
13573
Group
Condition
mRNA
_5201
mRNA
_5202
mRNA
_5203
mRNA
_5204
mRNA
_5205
13569
13570
13571
13572
13573
facs on lipid accumulation
Sorted High BODIPY Gate
-3.4
N.D.
+0.3
-0.3
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-2.7
N.D.
+0.3
-0.2
-0.4
growth on oleic acid
YNB Glucose
-2.1
N.D.
+0.3
-0.2
-0.5
auxotrophy
YNB Glucose
-3.1
N.D.
+0.3
+0.5
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-2.6
N.D.
+0.1
-0.5
+0.9
growth on ricinoleic acid
YNB Glucose
-2.0
N.D.
+0.1
+0.4
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
N.D.
+0.3
-1.4
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.7
N.D.
-0.1
+0.2
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-2.3
N.D.
+0.2
+1.1
-0.2
growth on oleic acid
YNB Oleic Acid
-0.7
N.D.
+0.3
-0.2
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-1.9
N.D.
+0.1
+0.6
+0.8
ypd buoyancy
40 hrs No Buoyancy Separation
-0.8
N.D.
-0.2
+0.4
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.3
N.D.
-0.0
+0.6
+0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
N.D.
+0.1
-0.3
+0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.7
N.D.
+0.2
-1.4
+0.5
ypd buoyancy
40 hrs High Buoyancy
+0.3
N.D.
-0.1
-0.1
+0.2
growth on ypd
YPD
-0.8
N.D.
-0.2
+1.6
+0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.4
N.D.
-0.0
+0.9
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.7
N.D.
+0.0
+0.3
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.5
N.D.
+0.2
+0.8
+0.1
auxotrophy
Dropout Complete
+1.0
N.D.
+0.3
+0.5
+0.0
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