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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13571 and 13572 are separated by 401 nucleotides
13572 and 13573 are separated by 1211 nucleotides
13573 and 13574 are separated by 913 nucleotides
13574 and 13575 are separated by 1015 nucleotides
mRNA_5203: 13571 - K06709 KDM4, JMJD2, JHDM3 jumonji domain-containing protein 2, at 141,412 to 145,870
13571
mRNA_5204: 13572 - Hypothetical Protein, at 146,272 to 147,091
13572
mRNA_5205: 13573 - KOG0001 Ubiquitin and ubiquitin-like proteins, at 148,303 to 148,964
13573
mRNA_5206: 13574 - HMMPfam-Ubiquitin family-PF00240,ProSiteProfiles-Ubiquitin domain profile.-PS50053,SMART-Ubiquitin homologues-SM00213,SUPERFAMILY--SSF54236, at 149,878 to 151,168
13574
mRNA_5207: 13575 - KOG0001 Ubiquitin and ubiquitin-like proteins, at 152,184 to 152,471
13575
Group
Condition
mRNA
_5203
mRNA
_5204
mRNA
_5205
mRNA
_5206
mRNA
_5207
13571
13572
13573
13574
13575
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
-1.4
+0.1
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-1.4
+0.5
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.2
-0.4
-0.3
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-0.3
+0.1
-0.5
N.D.
growth on oleic acid
YNB Glucose
+0.3
-0.2
-0.5
+0.0
N.D.
growth on ricinoleic acid
YNB Glucose
+0.1
+0.4
-0.1
-0.5
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.2
+0.4
-0.4
N.D.
growth on oleic acid
YNB Oleic Acid
+0.3
-0.2
-0.0
+0.0
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.1
+0.2
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.3
+0.6
-0.1
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.4
+0.2
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.5
+0.9
+0.0
N.D.
auxotrophy
YNB Glucose
+0.3
+0.5
-0.0
-0.3
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
+0.6
+0.5
-0.6
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.3
+0.3
+0.0
N.D.
auxotrophy
Dropout Complete
+0.3
+0.5
+0.0
+0.2
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+1.1
-0.2
-0.1
N.D.
growth on ypd
YPD
-0.2
+1.6
+0.0
-0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.9
+0.3
+0.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.8
+0.1
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.6
+0.8
+0.1
N.D.
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