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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13572 and 13573 are separated by 1211 nucleotides
13573 and 13574 are separated by 913 nucleotides
13574 and 13575 are separated by 1015 nucleotides
13575 and 13576 are separated by 35 nucleotides
mRNA_5204: 13572 - Hypothetical Protein, at 146,272 to 147,091
13572
mRNA_5205: 13573 - KOG0001 Ubiquitin and ubiquitin-like proteins, at 148,303 to 148,964
13573
mRNA_5206: 13574 - HMMPfam-Ubiquitin family-PF00240,ProSiteProfiles-Ubiquitin domain profile.-PS50053,SMART-Ubiquitin homologues-SM00213,SUPERFAMILY--SSF54236, at 149,878 to 151,168
13574
mRNA_5207: 13575 - KOG0001 Ubiquitin and ubiquitin-like proteins, at 152,184 to 152,471
13575
mRNA_5208: 13576 - Hypothetical Protein, at 152,507 to 152,935
13576
Group
Condition
mRNA
_5204
mRNA
_5205
mRNA
_5206
mRNA
_5207
mRNA
_5208
13572
13573
13574
13575
13576
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.4
+0.5
-0.1
N.D.
-0.3
growth on oleic acid
YNB Glucose
-0.2
-0.5
+0.0
N.D.
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.4
+0.1
-0.1
N.D.
+0.6
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.4
-0.3
N.D.
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.4
-0.4
N.D.
-0.6
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
+0.1
-0.5
N.D.
+0.3
growth on ricinoleic acid
YNB Glucose
+0.4
-0.1
-0.5
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
+0.6
-0.1
N.D.
-0.4
growth on oleic acid
YNB Oleic Acid
-0.2
-0.0
+0.0
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.5
+0.9
+0.0
N.D.
-0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.3
+0.0
N.D.
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.2
+0.2
N.D.
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.6
+0.5
-0.6
N.D.
-0.1
auxotrophy
YNB Glucose
+0.5
-0.0
-0.3
N.D.
+0.5
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
+0.2
-0.0
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.6
+0.8
+0.1
N.D.
-0.7
facs on lipid accumulation
Sorted No BODIPY Gate
+1.1
-0.2
-0.1
N.D.
+0.2
auxotrophy
Dropout Complete
+0.5
+0.0
+0.2
N.D.
+0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.9
+0.3
+0.2
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.8
+0.1
+0.3
N.D.
+0.2
growth on ypd
YPD
+1.6
+0.0
-0.2
N.D.
+0.4
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