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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13575 and 13576 are separated by 35 nucleotides
13576 and 13577 are separated by 445 nucleotides
13577 and 13578 are separated by 925 nucleotides
13578 and 13579 are separated by 385 nucleotides
mRNA_5207: 13575 - KOG0001 Ubiquitin and ubiquitin-like proteins, at 152,184 to 152,471
13575
mRNA_5208: 13576 - Hypothetical Protein, at 152,507 to 152,935
13576
mRNA_5209: 13577 - K03257 EIF4A translation initiation factor 4A, at 153,381 to 155,810
13577
mRNA_5210: 13578 - KOG3221 Glycolipid transfer protein, at 156,736 to 157,976
13578
mRNA_5211: 13579 - BLAST related to UPF0768 protein YBL029C-A [Zygosaccharomyc..., at 158,362 to 159,031
13579
Group
Condition
mRNA
_5207
mRNA
_5208
mRNA
_5209
mRNA
_5210
mRNA
_5211
13575
13576
13577
13578
13579
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.2
N.D.
-2.3
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.3
N.D.
-2.3
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.6
N.D.
-1.8
-0.1
growth on oleic acid
YNB Glucose
N.D.
-0.3
N.D.
-0.1
-0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.4
N.D.
-0.9
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.1
N.D.
-0.7
-0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.1
N.D.
-0.0
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.4
N.D.
-0.1
+0.3
growth on oleic acid
YNB Oleic Acid
N.D.
-0.1
N.D.
+0.4
-0.6
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.2
N.D.
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.3
N.D.
-0.3
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.7
N.D.
+0.4
+0.3
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.1
N.D.
-0.2
+0.3
auxotrophy
YNB Glucose
N.D.
+0.5
N.D.
-0.1
+0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.3
N.D.
+0.6
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.2
N.D.
+0.0
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.6
N.D.
+0.9
+0.3
growth on ricinoleic acid
YNB Glucose
N.D.
-0.2
N.D.
+0.7
+0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
N.D.
+0.3
+0.3
auxotrophy
Dropout Complete
N.D.
+0.4
N.D.
+0.7
-0.3
growth on ypd
YPD
N.D.
+0.4
N.D.
+0.0
+0.7
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