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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13579 and 13580 are separated by 603 nucleotides
13580 and 13581 are separated by 624 nucleotides
13581 and 13582 are separated by 194 nucleotides
13582 and 13583 are separated by 146 nucleotides
mRNA_5211: 13579 - BLAST related to UPF0768 protein YBL029C-A [Zygosaccharomyc..., at 158,362 to 159,031
13579
mRNA_5212: 13580 - K00624 E2.3.1.7 carnitine O-acetyltransferase, at 159,635 to 162,568
13580
mRNA_5213: 13581 - Hypothetical Protein, at 163,193 to 164,200
13581
mRNA_5214: 13582 - K03845 ALG3 alpha-1,3-mannosyltransferase, at 164,395 to 166,467
13582
mRNA_5215: 13583 - KOG1940 Zn-finger protein, at 166,614 to 167,435
13583
Group
Condition
mRNA
_5211
mRNA
_5212
mRNA
_5213
mRNA
_5214
mRNA
_5215
13579
13580
13581
13582
13583
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.1
-0.2
-0.2
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
+0.4
+0.1
-1.3
+0.2
auxotrophy
Dropout Complete
-0.3
+0.2
-0.0
-0.0
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
+0.4
+0.2
-0.5
-0.7
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.2
+0.1
+0.0
-0.2
growth on oleic acid
YNB Oleic Acid
-0.6
-0.0
+0.4
+0.4
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.3
-0.0
-0.1
+0.1
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
+0.1
-0.1
-0.2
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
+0.3
-0.4
-0.3
+0.2
auxotrophy
YNB Glucose
+0.0
+0.2
-0.2
-0.1
+0.2
growth on oleic acid
YNB Glucose
-0.6
+0.3
+0.4
+0.3
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-0.2
+0.1
-0.2
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.2
+0.1
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.4
+0.4
-0.1
+0.4
growth on ricinoleic acid
YNB Glucose
+0.1
+0.5
+0.1
-0.2
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.2
+0.1
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.2
+0.4
-0.1
+0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.1
+0.2
-0.0
+0.8
growth on ypd
YPD
+0.7
+0.4
-0.1
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
-0.3
+0.3
+0.1
+0.6
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-0.1
+0.2
-0.1
+1.1
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