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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13581 and 13582 are separated by 194 nucleotides
13582 and 13583 are separated by 146 nucleotides
13583 and 13585 are separated by 315 nucleotides
13585 and 13584 are separated by 698 nucleotides
mRNA_5213: 13581 - Hypothetical Protein, at 163,193 to 164,200
13581
mRNA_5214: 13582 - K03845 ALG3 alpha-1,3-mannosyltransferase, at 164,395 to 166,467
13582
mRNA_5215: 13583 - KOG1940 Zn-finger protein, at 166,614 to 167,435
13583
mRNA_5217: 13585 - Hypothetical Protein, at 167,751 to 168,514
13585
mRNA_5216: 13584 - K04648 DCTN1 dynactin 1, at 169,213 to 174,465
13584
Group
Condition
mRNA
_5213
mRNA
_5214
mRNA
_5215
mRNA
_5217
mRNA
_5216
13581
13582
13583
13585
13584
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.5
-0.7
-0.3
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-1.3
+0.2
-0.1
+0.6
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.3
+0.2
+1.0
-0.9
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.2
-0.3
+0.4
-0.1
growth on ypd
YPD
-0.1
+0.1
+0.1
+0.2
-0.5
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.2
+0.2
+0.3
-1.0
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.0
-0.2
+0.2
-0.2
auxotrophy
Dropout Complete
-0.0
-0.0
-0.2
+0.2
-0.0
auxotrophy
YNB Glucose
-0.2
-0.1
+0.2
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.2
+0.2
-0.1
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
-0.1
+0.4
-0.3
-0.3
growth on ricinoleic acid
YNB Glucose
+0.1
-0.2
+0.3
-0.1
+0.3
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.1
-0.3
+0.2
+0.6
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.2
+0.1
+0.4
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+0.1
+0.6
-0.5
+0.2
growth on oleic acid
YNB Oleic Acid
+0.4
+0.4
-0.1
-0.3
+0.3
growth on oleic acid
YNB Glucose
+0.4
+0.3
-0.3
-0.1
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.2
+0.3
+0.6
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
-0.1
+0.4
+0.0
+0.5
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.1
+1.1
+0.1
+0.8
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.0
+0.8
+0.8
+0.8
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