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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13583 and 13585 are separated by 315 nucleotides
13585 and 13584 are separated by 698 nucleotides
13584 and 13586 are separated by 131 nucleotides
13586 and 13587 are separated by 187 nucleotides
mRNA_5215: 13583 - KOG1940 Zn-finger protein, at 166,614 to 167,435
13583
mRNA_5217: 13585 - Hypothetical Protein, at 167,751 to 168,514
13585
mRNA_5216: 13584 - K04648 DCTN1 dynactin 1, at 169,213 to 174,465
13584
mRNA_5218: 13586 - HMMPfam-RNA12 protein-PF10443,SUPERFAMILY--SSF52540,SUPERFAMILY--SSF54928, at 174,597 to 177,713
13586
mRNA_5219: 13587 - Hypothetical Protein, at 177,901 to 180,149
13587
Group
Condition
mRNA
_5215
mRNA
_5217
mRNA
_5216
mRNA
_5218
mRNA
_5219
13583
13585
13584
13586
13587
growth on oleic acid
YNB Oleic Acid
-0.1
-0.3
+0.3
-0.2
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.3
+0.4
-0.1
-0.2
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
-0.3
-0.3
-0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.7
-0.3
+0.1
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.6
-0.5
+0.2
-0.3
-0.2
growth on oleic acid
YNB Glucose
-0.3
-0.1
+0.3
+0.0
-0.1
auxotrophy
YNB Glucose
+0.2
+0.1
-0.0
-0.2
-0.1
auxotrophy
Dropout Complete
-0.2
+0.2
-0.0
-0.2
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.3
-1.0
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.1
+0.0
+0.1
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.2
-0.2
+0.2
+0.2
growth on ypd
YPD
+0.1
+0.2
-0.5
+0.3
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
+1.0
-0.9
-0.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.4
+0.3
-0.3
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.2
+0.6
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
+0.0
+0.5
-0.2
+0.1
growth on ricinoleic acid
YNB Glucose
+0.3
-0.1
+0.3
+0.3
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.6
+0.4
-0.1
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.1
+0.6
+0.7
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.8
+0.8
+0.8
-0.1
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+1.1
+0.1
+0.8
+0.3
+0.1
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