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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13586 and 13587 are separated by 187 nucleotides
13587 and 13588 are separated by 254 nucleotides
13588 and 13589 are separated by 1262 nucleotides
13589 and 13590 are separated by 265 nucleotides
mRNA_5218: 13586 - HMMPfam-RNA12 protein-PF10443,SUPERFAMILY--SSF52540,SUPERFAMILY--SSF54928, at 174,597 to 177,713
13586
mRNA_5219: 13587 - Hypothetical Protein, at 177,901 to 180,149
13587
mRNA_5220: 13588 - K09241 GAL4 transcriptional regulatory protein GAL4, at 180,404 to 182,796
13588
mRNA_5221: 13589 - HMMPfam-Cellulase (glycosyl hydrolase family 5)-PF00150,SUPERFAMILY--SSF51445, at 184,059 to 187,472
13589
mRNA_5222: 13590 - Hypothetical Protein, at 187,738 to 188,641
13590
Group
Condition
mRNA
_5218
mRNA
_5219
mRNA
_5220
mRNA
_5221
mRNA
_5222
13586
13587
13588
13589
13590
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
+0.1
-0.2
-0.2
-1.8
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.3
-0.0
-0.0
-1.7
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.1
+0.0
-0.1
-0.8
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.2
-0.1
-0.1
-1.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.7
+0.0
-0.2
+0.2
-1.3
auxotrophy
Dropout Complete
-0.2
+0.1
-0.3
-0.1
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.2
-0.2
-0.1
-0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.2
-0.4
-0.0
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.2
+0.3
+0.0
-0.2
growth on ricinoleic acid
YNB Glucose
+0.3
+0.0
+0.0
+0.1
-0.8
growth on oleic acid
YNB Oleic Acid
-0.2
-0.2
-0.2
-0.1
+0.5
growth on oleic acid
YNB Glucose
+0.0
-0.1
-0.2
+0.1
+0.3
auxotrophy
YNB Glucose
-0.2
-0.1
-0.1
+0.0
+0.6
auxotrophy
YNB Glucose 75mM Arginine
-0.3
-0.0
+0.0
-0.0
+0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.1
+0.3
+0.0
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
+0.1
+0.2
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.1
+0.2
-0.1
+0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.1
+0.3
-0.2
+0.6
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.2
+0.4
+0.0
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.2
+0.3
-0.1
+0.8
growth on ypd
YPD
+0.3
-0.0
+0.0
+0.0
+2.4
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