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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13588 and 13589 are separated by 1262 nucleotides
13589 and 13590 are separated by 265 nucleotides
13590 and 13591 are separated by 422 nucleotides
13591 and 13592 are separated by 324 nucleotides
mRNA_5220: 13588 - K09241 GAL4 transcriptional regulatory protein GAL4, at 180,404 to 182,796
13588
mRNA_5221: 13589 - HMMPfam-Cellulase (glycosyl hydrolase family 5)-PF00150,SUPERFAMILY--SSF51445, at 184,059 to 187,472
13589
mRNA_5222: 13590 - Hypothetical Protein, at 187,738 to 188,641
13590
mRNA_5223: 13591 - Hypothetical Protein, at 189,064 to 190,572
13591
mRNA_5224: 13592 - KOG0001 Ubiquitin and ubiquitin-like proteins, at 190,897 to 192,363
13592
Group
Condition
mRNA
_5220
mRNA
_5221
mRNA
_5222
mRNA
_5223
mRNA
_5224
13588
13589
13590
13591
13592
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
-0.0
-1.7
-0.3
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-0.2
-1.8
+0.3
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.2
-1.3
-0.2
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.1
-1.0
-0.1
-0.0
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.1
-0.8
+0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.1
-0.4
+0.0
-0.2
growth on ricinoleic acid
YNB Glucose
+0.0
+0.1
-0.8
-0.3
+0.1
auxotrophy
Dropout Complete
-0.3
-0.1
-0.0
-0.0
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.1
-0.2
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+0.0
-0.2
-0.2
-0.1
growth on oleic acid
YNB Glucose
-0.2
+0.1
+0.3
-0.3
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
+0.0
+0.2
-0.4
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.4
-0.0
+0.4
+0.1
+0.1
growth on oleic acid
YNB Oleic Acid
-0.2
-0.1
+0.5
-0.0
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
+0.0
+0.2
-0.3
-0.0
auxotrophy
YNB Glucose
-0.1
+0.0
+0.6
-0.2
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
-0.2
+0.6
+0.0
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.0
+0.6
+0.0
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.1
+0.7
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-0.1
+0.8
-0.3
+0.0
growth on ypd
YPD
+0.0
+0.0
+2.4
-0.1
+0.1
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