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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13591 and 13592 are separated by 324 nucleotides
13592 and 13593 are separated by 264 nucleotides
13593 and 13594 are separated by 344 nucleotides
13594 and 13595 are separated by 168 nucleotides
mRNA_5223: 13591 - Hypothetical Protein, at 189,064 to 190,572
13591
mRNA_5224: 13592 - KOG0001 Ubiquitin and ubiquitin-like proteins, at 190,897 to 192,363
13592
mRNA_5225: 13593 - HMMPfam-Glycosyl hydrolases family 16-PF00722,SUPERFAMILY--SSF49899, at 192,628 to 196,368
13593
mRNA_5226: 13594 - K12472 EPS15 epidermal growth factor receptor substrate 15, at 196,713 to 201,520
13594
mRNA_5227: 13595 - K00601 E2.1.2.2 phosphoribosylglycinamide formyltransferase, at 201,689 to 202,738
13595
Group
Condition
mRNA
_5223
mRNA
_5224
mRNA
_5225
mRNA
_5226
mRNA
_5227
13591
13592
13593
13594
13595
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.3
-0.1
-0.6
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.1
-0.0
-0.5
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
-0.0
+0.1
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
-0.0
-0.1
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.0
-0.1
-0.3
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.2
-0.1
-0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.1
-0.1
-0.1
N.D.
growth on oleic acid
YNB Glucose
-0.3
-0.0
-0.0
+0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.1
+0.0
-0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.0
-0.0
-0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-0.1
+0.1
-0.0
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
+0.0
+0.1
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
+0.0
+0.2
+0.1
N.D.
auxotrophy
Dropout Complete
-0.0
-0.0
+0.1
-0.0
N.D.
growth on oleic acid
YNB Oleic Acid
-0.0
+0.1
-0.1
+0.0
N.D.
growth on ricinoleic acid
YNB Glucose
-0.3
+0.1
+0.1
+0.1
N.D.
growth on ypd
YPD
-0.1
+0.1
+0.0
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.1
+0.0
-0.0
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-0.1
-0.0
-0.1
N.D.
auxotrophy
YNB Glucose
-0.2
+0.1
+0.1
+0.3
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.0
+0.0
+0.2
+0.1
N.D.
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