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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13593 and 13594 are separated by 344 nucleotides
13594 and 13595 are separated by 168 nucleotides
13595 and 13596 are separated by 370 nucleotides
13596 and 13597 are separated by 117 nucleotides
mRNA_5225: 13593 - HMMPfam-Glycosyl hydrolases family 16-PF00722,SUPERFAMILY--SSF49899, at 192,628 to 196,368
13593
mRNA_5226: 13594 - K12472 EPS15 epidermal growth factor receptor substrate 15, at 196,713 to 201,520
13594
mRNA_5227: 13595 - K00601 E2.1.2.2 phosphoribosylglycinamide formyltransferase, at 201,689 to 202,738
13595
mRNA_5228: 13596 - HMMPfam-Mis6-PF07778, at 203,109 to 206,278
13596
mRNA_5229: 13597 - SUPERFAMILY--SSF51445, at 206,396 to 208,003
13597
Group
Condition
mRNA
_5225
mRNA
_5226
mRNA
_5227
mRNA
_5228
mRNA
_5229
13593
13594
13595
13596
13597
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
-0.1
N.D.
-0.7
-0.6
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.6
N.D.
+0.0
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.2
N.D.
-0.1
-0.1
auxotrophy
Dropout Complete
+0.1
-0.0
N.D.
-0.3
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.1
N.D.
+0.1
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
-0.5
N.D.
+0.1
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
-0.1
N.D.
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.3
N.D.
+0.1
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.1
N.D.
+0.1
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.3
N.D.
+0.2
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-0.0
N.D.
-0.0
-0.1
growth on oleic acid
YNB Glucose
-0.0
+0.1
N.D.
-0.1
-0.1
auxotrophy
YNB Glucose
+0.1
+0.3
N.D.
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.1
N.D.
+0.4
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.0
N.D.
+0.2
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.1
N.D.
-0.0
-0.0
growth on oleic acid
YNB Oleic Acid
-0.1
+0.0
N.D.
+0.2
+0.0
growth on ricinoleic acid
YNB Glucose
+0.1
+0.1
N.D.
+0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.2
N.D.
+0.1
-0.1
growth on ypd
YPD
+0.0
+0.1
N.D.
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.1
N.D.
+0.1
+0.1
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