Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 13599 and 13600 are separated by 512 nucleotides13600 and 13601 are separated by 968 nucleotides13601 and 13602 are separated by 758 nucleotides13602 and 13603 are separated by 514 nucleotides mRNA_5231: 13599 - Hypothetical Protein, at 216,501 to 218,178 13599 mRNA_5232: 13600 - SUPERFAMILY--SSF52047, at 218,691 to 220,745 13600 mRNA_5233: 13601 - HMMPfam-Transmembrane amino acid transporter protein-PF01490, at 221,714 to 224,141 13601 mRNA_5234: 13602 - KOG0725 Reductases with broad range of substrate specificities, at 224,900 to 226,337 13602 mRNA_5235: 13603 - KOG1178 Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes, at 226,852 to 231,804 13603
Group Condition mRNA_5231 mRNA_5232 mRNA_5233 mRNA_5234 mRNA_5235
13599 13600 13601 13602 13603
growth on ypd YPD +0.1 +0.2 -0.0 -0.8 -0.2
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.0 -0.1 -0.0 -0.4 -0.1
facs on lipid accumulation Sorted High BODIPY Gate -0.1 -1.0 -0.1 +0.8 +0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.0 -0.0 -0.1 +0.2 -0.2
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.1 -0.1 +0.0 +0.5 -0.4
ypd buoyancy 40 hrs High Buoyancy -0.0 +0.1 +0.5 -0.1 -0.3
facs on lipid accumulation Sorted Low BODIPY Gate -0.2 +0.3 -0.0 +0.3 -0.1
facs on lipid accumulation Sorted No BODIPY Gate +0.1 -0.1 -0.2 +0.5 +0.1
auxotrophy Dropout Complete +0.1 -0.1 +0.1 +0.3 -0.0
growth on oleic acid YNB Oleic Acid +0.2 -0.0 +0.1 +0.4 -0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.0 +0.2 -0.1 +0.5 -0.1
auxotrophy YNB Glucose 75mM Methionine +0.4 -0.2 -0.1 +0.6 -0.1
auxotrophy YNB Glucose 75mM Arginine +0.2 +0.1 +0.2 +0.2 -0.0
ypd buoyancy 40 hrs Median Buoyancy +0.1 +0.1 +0.5 +0.2 -0.1
growth on oleic acid YNB Glucose -0.0 +0.0 +0.0 +0.6 +0.2
ypd buoyancy 40 hrs No Buoyancy Separation -0.3 +0.2 +0.3 +0.8 -0.1
auxotrophy YNB Glucose +0.4 -0.1 +0.2 +0.7 -0.1
ypd buoyancy 40 hrs Low Buoyancy +0.0 +0.3 +0.8 +0.4 +0.0
growth on ricinoleic acid YNB Glucose +0.1 +0.2 +0.1 +1.2 +0.1
growth on ricinoleic acid YNB Methylricinoleic Acid -0.1 +0.4 +0.4 +1.2 -0.1
growth on ricinoleic acid YNB Ricinoleic Acid +0.1 +0.3 +0.3 +1.7 -0.1
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