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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13600 and 13601 are separated by 968 nucleotides
13601 and 13602 are separated by 758 nucleotides
13602 and 13603 are separated by 514 nucleotides
13603 and 13604 are separated by 203 nucleotides
mRNA_5232: 13600 - SUPERFAMILY--SSF52047, at 218,691 to 220,745
13600
mRNA_5233: 13601 - HMMPfam-Transmembrane amino acid transporter protein-PF01490, at 221,714 to 224,141
13601
mRNA_5234: 13602 - KOG0725 Reductases with broad range of substrate specificities, at 224,900 to 226,337
13602
mRNA_5235: 13603 - KOG1178 Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes, at 226,852 to 231,804
13603
mRNA_5236: 13604 - KOG2031 Tyrosyl-DNA phosphodiesterase, at 232,008 to 233,871
13604
Group
Condition
mRNA
_5232
mRNA
_5233
mRNA
_5234
mRNA
_5235
mRNA
_5236
13600
13601
13602
13603
13604
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.0
-0.4
-0.1
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-1.0
-0.1
+0.8
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
-0.1
+0.2
-0.2
-0.1
growth on ypd
YPD
+0.2
-0.0
-0.8
-0.2
+0.6
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.1
+0.6
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.0
+0.5
-0.4
-0.0
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.5
-0.1
-0.3
-0.1
auxotrophy
Dropout Complete
-0.1
+0.1
+0.3
-0.0
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.2
+0.5
+0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.5
+0.2
-0.1
-0.3
growth on oleic acid
YNB Oleic Acid
-0.0
+0.1
+0.4
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.1
+0.5
-0.1
+0.0
growth on oleic acid
YNB Glucose
+0.0
+0.0
+0.6
+0.2
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
-0.0
+0.3
-0.1
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.2
+0.2
-0.0
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.8
+0.4
+0.0
-0.6
auxotrophy
YNB Glucose
-0.1
+0.2
+0.7
-0.1
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
+0.3
+0.8
-0.1
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
+0.4
+1.2
-0.1
-0.2
growth on ricinoleic acid
YNB Glucose
+0.2
+0.1
+1.2
+0.1
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.3
+1.7
-0.1
+0.1
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