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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13602 and 13603 are separated by 514 nucleotides
13603 and 13604 are separated by 203 nucleotides
13604 and 13605 are separated by 311 nucleotides
13605 and 13606 are separated by 538 nucleotides
mRNA_5234: 13602 - KOG0725 Reductases with broad range of substrate specificities, at 224,900 to 226,337
13602
mRNA_5235: 13603 - KOG1178 Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes, at 226,852 to 231,804
13603
mRNA_5236: 13604 - KOG2031 Tyrosyl-DNA phosphodiesterase, at 232,008 to 233,871
13604
mRNA_5237: 13605 - K02914 RP-L34, MRPL34, rpmH large subunit ribosomal protein L34, at 234,183 to 234,602
13605
mRNA_5238: 13606 - KOG1199 Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase, at 235,141 to 236,473
13606
Group
Condition
mRNA
_5234
mRNA
_5235
mRNA
_5236
mRNA
_5237
mRNA
_5238
13602
13603
13604
13605
13606
ypd buoyancy
40 hrs Low Buoyancy
+0.4
+0.0
-0.6
N.D.
-0.2
growth on ypd
YPD
-0.8
-0.2
+0.6
N.D.
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.3
-0.1
N.D.
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.1
-0.3
N.D.
-0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.6
-0.1
-0.2
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
-0.1
-0.0
N.D.
+0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
-0.1
+0.2
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.2
-0.1
N.D.
+0.3
growth on oleic acid
YNB Oleic Acid
+0.4
-0.1
+0.1
N.D.
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.8
-0.1
-0.2
N.D.
-0.1
auxotrophy
Dropout Complete
+0.3
-0.0
-0.1
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
-0.4
-0.0
N.D.
+0.6
growth on oleic acid
YNB Glucose
+0.6
+0.2
-0.3
N.D.
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.5
+0.1
-0.1
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
-0.1
+0.0
N.D.
+0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.0
+0.3
N.D.
+0.5
auxotrophy
YNB Glucose
+0.7
-0.1
+0.3
N.D.
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.8
+0.1
-0.2
N.D.
+0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
+1.7
-0.1
+0.1
N.D.
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.2
-0.1
-0.2
N.D.
+0.8
growth on ricinoleic acid
YNB Glucose
+1.2
+0.1
+0.4
N.D.
+0.5
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