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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13604 and 13605 are separated by 311 nucleotides
13605 and 13606 are separated by 538 nucleotides
13606 and 13607 are separated by 150 nucleotides
13607 and 13608 are separated by 373 nucleotides
mRNA_5236: 13604 - KOG2031 Tyrosyl-DNA phosphodiesterase, at 232,008 to 233,871
13604
mRNA_5237: 13605 - K02914 RP-L34, MRPL34, rpmH large subunit ribosomal protein L34, at 234,183 to 234,602
13605
mRNA_5238: 13606 - KOG1199 Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase, at 235,141 to 236,473
13606
mRNA_5239: 13607 - K10859 ALKBH2 alpha-ketoglutarate-dependent dioxygenase alkB homolog 2, at 236,624 to 237,646
13607
mRNA_5240: 13608 - HMMPfam-Ubiquinol-cytochrome-c reductase complex subunit (QCR10)-PF09796, at 238,020 to 238,702
13608
Group
Condition
mRNA
_5236
mRNA
_5237
mRNA
_5238
mRNA
_5239
mRNA
_5240
13604
13605
13606
13607
13608
ypd buoyancy
40 hrs Low Buoyancy
-0.6
N.D.
-0.2
-0.3
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
N.D.
-0.1
-0.3
-0.9
growth on oleic acid
YNB Oleic Acid
+0.1
N.D.
-0.2
-0.4
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.3
N.D.
-0.0
-0.0
-0.1
growth on oleic acid
YNB Glucose
-0.3
N.D.
+0.1
-0.1
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
N.D.
+0.0
-0.5
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
N.D.
+0.6
-0.3
-0.6
ypd buoyancy
40 hrs High Buoyancy
-0.1
N.D.
+0.2
-0.1
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
N.D.
-0.3
+0.4
-0.6
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
N.D.
+0.2
-0.6
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
N.D.
+0.3
+0.0
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
N.D.
+0.6
-0.2
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
N.D.
+0.6
-0.4
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
N.D.
+0.4
-0.1
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.2
N.D.
-0.1
+0.2
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
N.D.
+0.8
-0.2
-0.1
growth on ypd
YPD
+0.6
N.D.
+0.1
-0.5
+0.3
auxotrophy
Dropout Complete
-0.1
N.D.
+0.3
-0.2
+0.6
growth on ricinoleic acid
YNB Glucose
+0.4
N.D.
+0.5
+0.1
+0.1
auxotrophy
YNB Glucose
+0.3
N.D.
+0.4
+0.2
+0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.3
N.D.
+0.5
+0.3
+0.7
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