Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 13605 and 13606 are separated by 538 nucleotides13606 and 13607 are separated by 150 nucleotides13607 and 13608 are separated by 373 nucleotides13608 and 13609 are separated by 284 nucleotides mRNA_5237: 13605 - K02914 RP-L34, MRPL34, rpmH large subunit ribosomal protein L34, at 234,183 to 234,602 13605 mRNA_5238: 13606 - KOG1199 Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase, at 235,141 to 236,473 13606 mRNA_5239: 13607 - K10859 ALKBH2 alpha-ketoglutarate-dependent dioxygenase alkB homolog 2, at 236,624 to 237,646 13607 mRNA_5240: 13608 - HMMPfam-Ubiquinol-cytochrome-c reductase complex subunit (QCR10)-PF09796, at 238,020 to 238,702 13608 mRNA_5241: 13609 - K01099 INPP5B_F inositol polyphosphate 5-phosphatase INPP5B/F, at 238,987 to 242,229 13609
Group Condition mRNA_5237 mRNA_5238 mRNA_5239 mRNA_5240 mRNA_5241
13605 13606 13607 13608 13609
ypd buoyancy 40 hrs Low Buoyancy N.D. -0.2 -0.3 -0.3 -0.1
ypd buoyancy 40 hrs No Buoyancy Separation N.D. -0.1 -0.3 -0.9 +0.3
facs on lipid accumulation Sorted Low BODIPY Gate N.D. -0.3 +0.4 -0.6 -0.4
growth on oleic acid YNB Oleic Acid N.D. -0.2 -0.4 -0.2 -0.1
growth on ricinoleic acid YNB Ricinoleic Acid N.D. +0.0 -0.5 +0.0 -0.4
growth on ypd YPD N.D. +0.1 -0.5 +0.3 -0.3
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation N.D. +0.6 -0.3 -0.6 -0.0
facs on lipid accumulation Sorted No BODIPY Gate N.D. +0.2 -0.6 +0.3 -0.2
growth on oleic acid YNB Glucose N.D. +0.1 -0.1 -0.2 -0.0
facs on lipid accumulation Sorted High BODIPY Gate N.D. +0.6 -0.4 +0.1 -0.4
ypd buoyancy 40 hrs Median Buoyancy N.D. -0.0 -0.0 -0.1 +0.2
ypd buoyancy 40 hrs High Buoyancy N.D. +0.2 -0.1 -0.3 +0.2
buoyancy on lipid accumulation 40 hrs Low Buoyancy N.D. +0.4 -0.1 -0.3 +0.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy N.D. +0.6 -0.2 -0.3 +0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy N.D. +0.3 +0.0 -0.3 +0.0
auxotrophy YNB Glucose 75mM Methionine N.D. -0.1 +0.2 +0.3 -0.2
growth on ricinoleic acid YNB Methylricinoleic Acid N.D. +0.8 -0.2 -0.1 -0.1
auxotrophy Dropout Complete N.D. +0.3 -0.2 +0.6 -0.1
growth on ricinoleic acid YNB Glucose N.D. +0.5 +0.1 +0.1 -0.1
auxotrophy YNB Glucose N.D. +0.4 +0.2 +0.3 -0.1
auxotrophy YNB Glucose 75mM Arginine N.D. +0.5 +0.3 +0.7 -0.1
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