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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13605 and 13606 are separated by 538 nucleotides
13606 and 13607 are separated by 150 nucleotides
13607 and 13608 are separated by 373 nucleotides
13608 and 13609 are separated by 284 nucleotides
mRNA_5237: 13605 - K02914 RP-L34, MRPL34, rpmH large subunit ribosomal protein L34, at 234,183 to 234,602
13605
mRNA_5238: 13606 - KOG1199 Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase, at 235,141 to 236,473
13606
mRNA_5239: 13607 - K10859 ALKBH2 alpha-ketoglutarate-dependent dioxygenase alkB homolog 2, at 236,624 to 237,646
13607
mRNA_5240: 13608 - HMMPfam-Ubiquinol-cytochrome-c reductase complex subunit (QCR10)-PF09796, at 238,020 to 238,702
13608
mRNA_5241: 13609 - K01099 INPP5B_F inositol polyphosphate 5-phosphatase INPP5B/F, at 238,987 to 242,229
13609
Group
Condition
mRNA
_5237
mRNA
_5238
mRNA
_5239
mRNA
_5240
mRNA
_5241
13605
13606
13607
13608
13609
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.2
-0.3
-0.3
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.1
-0.3
-0.9
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.3
+0.4
-0.6
-0.4
growth on oleic acid
YNB Oleic Acid
N.D.
-0.2
-0.4
-0.2
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.0
-0.5
+0.0
-0.4
growth on ypd
YPD
N.D.
+0.1
-0.5
+0.3
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.6
-0.3
-0.6
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.2
-0.6
+0.3
-0.2
growth on oleic acid
YNB Glucose
N.D.
+0.1
-0.1
-0.2
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.6
-0.4
+0.1
-0.4
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.0
-0.0
-0.1
+0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.2
-0.1
-0.3
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.4
-0.1
-0.3
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.6
-0.2
-0.3
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.3
+0.0
-0.3
+0.0
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.1
+0.2
+0.3
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.8
-0.2
-0.1
-0.1
auxotrophy
Dropout Complete
N.D.
+0.3
-0.2
+0.6
-0.1
growth on ricinoleic acid
YNB Glucose
N.D.
+0.5
+0.1
+0.1
-0.1
auxotrophy
YNB Glucose
N.D.
+0.4
+0.2
+0.3
-0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.5
+0.3
+0.7
-0.1
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