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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13608 and 13609 are separated by 284 nucleotides
13609 and 13610 are separated by 1023 nucleotides
13610 and 13611 are separated by 2693 nucleotides
13611 and 13612 are separated by 921 nucleotides
mRNA_5240: 13608 - HMMPfam-Ubiquinol-cytochrome-c reductase complex subunit (QCR10)-PF09796, at 238,020 to 238,702
13608
mRNA_5241: 13609 - K01099 INPP5B_F inositol polyphosphate 5-phosphatase INPP5B/F, at 238,987 to 242,229
13609
mRNA_5242: 13610 - K02932 RP-L5e, RPL5 large subunit ribosomal protein L5e, at 243,253 to 244,505
13610
mRNA_5243: 13611 - KOG1601 GATA-4/5/6 transcription factors, at 247,199 to 251,043
13611
mRNA_5244: 13612 - HMMPfam-Glycosyl Hydrolase Family 88-PF07470,SUPERFAMILY--SSF48208, at 251,965 to 253,364
13612
Group
Condition
mRNA
_5240
mRNA
_5241
mRNA
_5242
mRNA
_5243
mRNA
_5244
13608
13609
13610
13611
13612
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
-0.4
N.D.
-0.8
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.1
N.D.
-0.4
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
+0.0
N.D.
+0.4
-0.9
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
-0.4
N.D.
-0.3
-0.1
growth on oleic acid
YNB Glucose
-0.2
-0.0
N.D.
-0.4
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.1
N.D.
-0.2
-0.1
growth on oleic acid
YNB Oleic Acid
-0.2
-0.1
N.D.
-0.3
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.2
N.D.
-0.3
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
+0.1
N.D.
+0.0
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
+0.1
N.D.
-0.2
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.2
N.D.
-0.2
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.6
-0.0
N.D.
+0.4
-0.1
growth on ypd
YPD
+0.3
-0.3
N.D.
-0.0
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.9
+0.3
N.D.
+0.7
-0.3
growth on ricinoleic acid
YNB Glucose
+0.1
-0.1
N.D.
-0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-0.2
N.D.
+0.1
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.4
N.D.
+0.7
-0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.3
-0.2
N.D.
+0.1
-0.1
auxotrophy
YNB Glucose
+0.3
-0.1
N.D.
+0.1
+0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.7
-0.1
N.D.
+0.0
-0.1
auxotrophy
Dropout Complete
+0.6
-0.1
N.D.
+0.1
-0.0
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