Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 13611 and 13612 are separated by 921 nucleotides13612 and 13613 are separated by 577 nucleotides13613 and 13614 are separated by 222 nucleotides13614 and 13615 are separated by 296 nucleotides mRNA_5243: 13611 - KOG1601 GATA-4/5/6 transcription factors, at 247,199 to 251,043 13611 mRNA_5244: 13612 - HMMPfam-Glycosyl Hydrolase Family 88-PF07470,SUPERFAMILY--SSF48208, at 251,965 to 253,364 13612 mRNA_5245: 13613 - KOG2887 Membrane protein involved in ER to Golgi transport, at 253,942 to 254,889 13613 mRNA_5246: 13614 - K00411 UQCRFS1, RIP1, petA ubiquinol-cytochrome c reductase iron-sulfur subunit, at 255,112 to 256,642 13614 mRNA_5247: 13615 - HMMPfam-Basic region leucine zipper-PF07716,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 256,939 to 258,074 13615
Group Condition mRNA_5243 mRNA_5244 mRNA_5245 mRNA_5246 mRNA_5247
13611 13612 13613 13614 13615
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.4 -0.9 N.D. -0.2 -0.4
growth on ricinoleic acid YNB Methylricinoleic Acid -0.4 -0.3 N.D. -0.3 +0.0
growth on ricinoleic acid YNB Ricinoleic Acid -0.3 -0.1 N.D. -0.4 -0.0
growth on oleic acid YNB Glucose -0.4 -0.2 N.D. -0.2 -0.0
facs on lipid accumulation Sorted High BODIPY Gate +0.7 -0.3 N.D. -1.3 +0.2
growth on ricinoleic acid YNB Glucose -0.1 -0.1 N.D. -0.6 -0.0
facs on lipid accumulation Sorted No BODIPY Gate +0.1 -0.1 N.D. -0.4 -0.2
growth on oleic acid YNB Oleic Acid -0.3 -0.1 N.D. -0.1 -0.1
auxotrophy YNB Glucose 75mM Methionine +0.1 -0.1 N.D. -0.1 -0.5
auxotrophy YNB Glucose +0.1 +0.0 N.D. +0.1 -0.5
auxotrophy YNB Glucose 75mM Arginine +0.0 -0.1 N.D. +0.0 -0.2
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.4 -0.1 N.D. -0.4 -0.2
ypd buoyancy 40 hrs Median Buoyancy -0.2 -0.2 N.D. -0.1 +0.2
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.2 -0.1 N.D. +0.3 -0.2
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.0 -0.3 N.D. +0.0 +0.1
ypd buoyancy 40 hrs High Buoyancy -0.3 -0.3 N.D. +0.5 -0.0
auxotrophy Dropout Complete +0.1 -0.0 N.D. +0.3 -0.4
growth on ypd YPD -0.0 -0.3 N.D. +0.2 +0.3
facs on lipid accumulation Sorted Low BODIPY Gate -0.8 -0.3 N.D. +1.5 +0.0
ypd buoyancy 40 hrs Low Buoyancy -0.2 -0.1 N.D. +0.7 +0.3
ypd buoyancy 40 hrs No Buoyancy Separation +0.7 -0.3 N.D. +0.1 +0.5
remove
mRNA_5243
plot
remove
mRNA_5244
plot
remove
mRNA_5245
remove
mRNA_5246
plot
remove
mRNA_5247
plot