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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13612 and 13613 are separated by 577 nucleotides
13613 and 13614 are separated by 222 nucleotides
13614 and 13615 are separated by 296 nucleotides
13615 and 13616 are separated by 804 nucleotides
mRNA_5244: 13612 - HMMPfam-Glycosyl Hydrolase Family 88-PF07470,SUPERFAMILY--SSF48208, at 251,965 to 253,364
13612
mRNA_5245: 13613 - KOG2887 Membrane protein involved in ER to Golgi transport, at 253,942 to 254,889
13613
mRNA_5246: 13614 - K00411 UQCRFS1, RIP1, petA ubiquinol-cytochrome c reductase iron-sulfur subunit, at 255,112 to 256,642
13614
mRNA_5247: 13615 - HMMPfam-Basic region leucine zipper-PF07716,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 256,939 to 258,074
13615
mRNA_5248: 13616 - KOG2084 Predicted histone tail methylase containing SET domain, at 258,879 to 260,199
13616
Group
Condition
mRNA
_5244
mRNA
_5245
mRNA
_5246
mRNA
_5247
mRNA
_5248
13612
13613
13614
13615
13616
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
N.D.
-1.3
+0.2
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.9
N.D.
-0.2
-0.4
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.1
N.D.
-0.1
-0.5
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
N.D.
-0.4
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
N.D.
-0.4
-0.2
-0.1
auxotrophy
YNB Glucose
+0.0
N.D.
+0.1
-0.5
-0.3
growth on oleic acid
YNB Oleic Acid
-0.1
N.D.
-0.1
-0.1
-0.2
growth on ricinoleic acid
YNB Glucose
-0.1
N.D.
-0.6
-0.0
+0.2
growth on oleic acid
YNB Glucose
-0.2
N.D.
-0.2
-0.0
+0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.2
N.D.
-0.1
+0.2
-0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.1
N.D.
+0.0
-0.2
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
N.D.
-0.3
+0.0
+0.2
auxotrophy
Dropout Complete
-0.0
N.D.
+0.3
-0.4
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
N.D.
-0.4
-0.0
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
N.D.
+0.0
+0.1
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.3
N.D.
+0.5
-0.0
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
N.D.
+0.3
-0.2
-0.1
growth on ypd
YPD
-0.3
N.D.
+0.2
+0.3
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
N.D.
+0.1
+0.5
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.1
N.D.
+0.7
+0.3
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
N.D.
+1.5
+0.0
+0.2
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