Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 13612 and 13613 are separated by 577 nucleotides13613 and 13614 are separated by 222 nucleotides13614 and 13615 are separated by 296 nucleotides13615 and 13616 are separated by 804 nucleotides mRNA_5244: 13612 - HMMPfam-Glycosyl Hydrolase Family 88-PF07470,SUPERFAMILY--SSF48208, at 251,965 to 253,364 13612 mRNA_5245: 13613 - KOG2887 Membrane protein involved in ER to Golgi transport, at 253,942 to 254,889 13613 mRNA_5246: 13614 - K00411 UQCRFS1, RIP1, petA ubiquinol-cytochrome c reductase iron-sulfur subunit, at 255,112 to 256,642 13614 mRNA_5247: 13615 - HMMPfam-Basic region leucine zipper-PF07716,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 256,939 to 258,074 13615 mRNA_5248: 13616 - KOG2084 Predicted histone tail methylase containing SET domain, at 258,879 to 260,199 13616
Group Condition mRNA_5244 mRNA_5245 mRNA_5246 mRNA_5247 mRNA_5248
13612 13613 13614 13615 13616
facs on lipid accumulation Sorted High BODIPY Gate -0.3 N.D. -1.3 +0.2 -0.3
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.9 N.D. -0.2 -0.4 -0.1
auxotrophy YNB Glucose 75mM Methionine -0.1 N.D. -0.1 -0.5 -0.1
facs on lipid accumulation Sorted No BODIPY Gate -0.1 N.D. -0.4 -0.2 +0.1
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.1 N.D. -0.4 -0.2 -0.1
auxotrophy YNB Glucose +0.0 N.D. +0.1 -0.5 -0.3
growth on oleic acid YNB Oleic Acid -0.1 N.D. -0.1 -0.1 -0.2
growth on ricinoleic acid YNB Glucose -0.1 N.D. -0.6 -0.0 +0.2
growth on oleic acid YNB Glucose -0.2 N.D. -0.2 -0.0 +0.0
ypd buoyancy 40 hrs Median Buoyancy -0.2 N.D. -0.1 +0.2 -0.4
auxotrophy YNB Glucose 75mM Arginine -0.1 N.D. +0.0 -0.2 -0.0
growth on ricinoleic acid YNB Methylricinoleic Acid -0.3 N.D. -0.3 +0.0 +0.2
auxotrophy Dropout Complete -0.0 N.D. +0.3 -0.4 -0.2
growth on ricinoleic acid YNB Ricinoleic Acid -0.1 N.D. -0.4 -0.0 +0.3
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.3 N.D. +0.0 +0.1 -0.0
ypd buoyancy 40 hrs High Buoyancy -0.3 N.D. +0.5 -0.0 -0.3
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.1 N.D. +0.3 -0.2 -0.1
growth on ypd YPD -0.3 N.D. +0.2 +0.3 -0.2
ypd buoyancy 40 hrs No Buoyancy Separation -0.3 N.D. +0.1 +0.5 -0.3
ypd buoyancy 40 hrs Low Buoyancy -0.1 N.D. +0.7 +0.3 -0.5
facs on lipid accumulation Sorted Low BODIPY Gate -0.3 N.D. +1.5 +0.0 +0.2
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