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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13613 and 13614 are separated by 222 nucleotides
13614 and 13615 are separated by 296 nucleotides
13615 and 13616 are separated by 804 nucleotides
13616 and 13617 are separated by 449 nucleotides
mRNA_5245: 13613 - KOG2887 Membrane protein involved in ER to Golgi transport, at 253,942 to 254,889
13613
mRNA_5246: 13614 - K00411 UQCRFS1, RIP1, petA ubiquinol-cytochrome c reductase iron-sulfur subunit, at 255,112 to 256,642
13614
mRNA_5247: 13615 - HMMPfam-Basic region leucine zipper-PF07716,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 256,939 to 258,074
13615
mRNA_5248: 13616 - KOG2084 Predicted histone tail methylase containing SET domain, at 258,879 to 260,199
13616
mRNA_5249: 13617 - K01535 PMA1, PMA2 H+-transporting ATPase, at 260,649 to 264,628
13617
Group
Condition
mRNA
_5245
mRNA
_5246
mRNA
_5247
mRNA
_5248
mRNA
_5249
13613
13614
13615
13616
13617
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-1.3
+0.2
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.2
-0.4
-0.1
N.D.
auxotrophy
YNB Glucose
N.D.
+0.1
-0.5
-0.3
N.D.
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.1
-0.5
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.4
-0.2
-0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.4
-0.2
+0.1
N.D.
growth on ricinoleic acid
YNB Glucose
N.D.
-0.6
-0.0
+0.2
N.D.
growth on oleic acid
YNB Oleic Acid
N.D.
-0.1
-0.1
-0.2
N.D.
auxotrophy
Dropout Complete
N.D.
+0.3
-0.4
-0.2
N.D.
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.0
-0.2
-0.0
N.D.
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.1
+0.2
-0.4
N.D.
growth on oleic acid
YNB Glucose
N.D.
-0.2
-0.0
+0.0
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.4
-0.0
+0.3
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.3
+0.0
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.3
-0.2
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.0
+0.1
-0.0
N.D.
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.5
-0.0
-0.3
N.D.
growth on ypd
YPD
N.D.
+0.2
+0.3
-0.2
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.1
+0.5
-0.3
N.D.
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.7
+0.3
-0.5
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+1.5
+0.0
+0.2
N.D.
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