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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13615 and 13616 are separated by 804 nucleotides
13616 and 13617 are separated by 449 nucleotides
13617 and 13618 are separated by 2732 nucleotides
13618 and 13619 are separated by 197 nucleotides
mRNA_5247: 13615 - HMMPfam-Basic region leucine zipper-PF07716,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 256,939 to 258,074
13615
mRNA_5248: 13616 - KOG2084 Predicted histone tail methylase containing SET domain, at 258,879 to 260,199
13616
mRNA_5249: 13617 - K01535 PMA1, PMA2 H+-transporting ATPase, at 260,649 to 264,628
13617
mRNA_5250: 13618 - SUPERFAMILY--SSF101898, at 267,361 to 271,776
13618
mRNA_5251: 13619 - K12867 SYF1, XAB2 pre-mRNA-splicing factor SYF1, at 271,974 to 275,743
13619
Group
Condition
mRNA
_5247
mRNA
_5248
mRNA
_5249
mRNA
_5250
mRNA
_5251
13615
13616
13617
13618
13619
auxotrophy
YNB Glucose
-0.5
-0.3
N.D.
+0.1
-1.5
auxotrophy
Dropout Complete
-0.4
-0.2
N.D.
+0.1
-1.2
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.0
N.D.
+0.1
-1.2
auxotrophy
YNB Glucose 75mM Methionine
-0.5
-0.1
N.D.
+0.1
-0.8
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.3
N.D.
-0.1
-0.9
growth on ypd
YPD
+0.3
-0.2
N.D.
+0.0
-1.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
+0.3
N.D.
-0.0
-1.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.3
N.D.
-0.1
-0.8
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.5
N.D.
-0.1
-0.7
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.1
N.D.
+0.2
-1.0
growth on oleic acid
YNB Oleic Acid
-0.1
-0.2
N.D.
-0.1
-0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
+0.2
N.D.
+0.2
-1.1
growth on ricinoleic acid
YNB Glucose
-0.0
+0.2
N.D.
+0.0
-0.5
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
-0.3
N.D.
-0.3
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.4
N.D.
+0.2
-0.1
growth on oleic acid
YNB Glucose
-0.0
+0.0
N.D.
-0.1
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
+0.2
N.D.
+0.1
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
-0.1
N.D.
+0.1
+1.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.1
N.D.
+0.1
+0.7
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.0
N.D.
+0.2
+0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.1
N.D.
+0.2
+1.5
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