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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13617 and 13618 are separated by 2732 nucleotides
13618 and 13619 are separated by 197 nucleotides
13619 and 13620 are separated by 685 nucleotides
13620 and 13621 are separated by 380 nucleotides
mRNA_5249: 13617 - K01535 PMA1, PMA2 H+-transporting ATPase, at 260,649 to 264,628
13617
mRNA_5250: 13618 - SUPERFAMILY--SSF101898, at 267,361 to 271,776
13618
mRNA_5251: 13619 - K12867 SYF1, XAB2 pre-mRNA-splicing factor SYF1, at 271,974 to 275,743
13619
mRNA_5252: 13620 - BLAST LPS-assembly protein LptD [Rhizoctonia solani], at 276,429 to 278,610
13620
mRNA_5253: 13621 - Hypothetical Protein, at 278,991 to 279,822
13621
Group
Condition
mRNA
_5249
mRNA
_5250
mRNA
_5251
mRNA
_5252
mRNA
_5253
13617
13618
13619
13620
13621
growth on ypd
YPD
N.D.
+0.0
-1.3
-0.2
-0.3
auxotrophy
YNB Glucose
N.D.
+0.1
-1.5
-0.0
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.2
-1.1
-0.5
-0.3
auxotrophy
Dropout Complete
N.D.
+0.1
-1.2
-0.2
-0.4
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.1
-1.2
-0.1
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.0
-1.3
+0.0
+0.0
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.1
-0.8
-0.3
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.1
-0.8
+0.1
-0.1
growth on oleic acid
YNB Oleic Acid
N.D.
-0.1
-0.6
+0.1
-0.3
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
-0.9
-0.0
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.2
-1.0
+0.1
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.3
+0.1
-0.5
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.1
-0.3
-0.2
-0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.1
-0.7
+0.1
+0.1
growth on ricinoleic acid
YNB Glucose
N.D.
+0.0
-0.5
+0.1
-0.1
growth on oleic acid
YNB Glucose
N.D.
-0.1
+0.2
-0.2
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.2
+0.5
-0.4
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.1
+0.7
-0.3
-0.5
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.2
-0.1
+0.0
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.1
+1.0
-0.6
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.2
+1.5
-0.6
-0.1
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