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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13620 and 13621 are separated by 380 nucleotides
13621 and 13622 are separated by 716 nucleotides
13622 and 13623 are separated by 289 nucleotides
13623 and 13624 are separated by 1804 nucleotides
mRNA_5252: 13620 - BLAST LPS-assembly protein LptD [Rhizoctonia solani], at 276,429 to 278,610
13620
mRNA_5253: 13621 - Hypothetical Protein, at 278,991 to 279,822
13621
mRNA_5254: 13622 - HMMPfam-10 TM Acyl Transferase domain found in Cas1p-PF07779,HMMPfam-GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p-PF13839, at 280,539 to 283,748
13622
mRNA_5255: 13623 - K12604 CNOT1, NOT1 CCR4-NOT transcription complex subunit 1, at 284,038 to 290,339
13623
mRNA_5256: 13624 - SUPERFAMILY--SSF53448, at 292,144 to 293,863
13624
Group
Condition
mRNA
_5252
mRNA
_5253
mRNA
_5254
mRNA
_5255
mRNA
_5256
13620
13621
13622
13623
13624
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
-0.2
+0.6
N.D.
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
-0.3
-0.4
N.D.
+0.7
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.1
-0.2
N.D.
-0.3
auxotrophy
Dropout Complete
-0.2
-0.4
+0.0
N.D.
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.3
+0.3
N.D.
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.1
+0.5
N.D.
-0.7
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.3
+0.4
N.D.
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.1
-0.0
N.D.
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.2
+0.2
N.D.
+0.1
growth on oleic acid
YNB Oleic Acid
+0.1
-0.3
+0.4
N.D.
+0.3
growth on oleic acid
YNB Glucose
-0.2
-0.3
+0.5
N.D.
+0.5
auxotrophy
YNB Glucose
-0.0
-0.3
+0.3
N.D.
+0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.6
-0.0
+0.5
N.D.
+0.8
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.3
+0.1
N.D.
+0.3
growth on ypd
YPD
-0.2
-0.3
+0.7
N.D.
+0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
-0.5
+1.1
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.6
-0.1
+0.7
N.D.
+1.2
growth on ricinoleic acid
YNB Glucose
+0.1
-0.1
+0.2
N.D.
+1.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
-0.0
+0.6
N.D.
+1.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.2
+0.4
N.D.
+1.7
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
+0.0
+0.2
N.D.
+1.5
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