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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13622 and 13623 are separated by 289 nucleotides
13623 and 13624 are separated by 1804 nucleotides
13624 and 13625 are separated by 1986 nucleotides
13625 and 13626 are separated by 199 nucleotides
mRNA_5254: 13622 - HMMPfam-10 TM Acyl Transferase domain found in Cas1p-PF07779,HMMPfam-GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p-PF13839, at 280,539 to 283,748
13622
mRNA_5255: 13623 - K12604 CNOT1, NOT1 CCR4-NOT transcription complex subunit 1, at 284,038 to 290,339
13623
mRNA_5256: 13624 - SUPERFAMILY--SSF53448, at 292,144 to 293,863
13624
mRNA_5257: 13625 - K11887 PAAF1, RPN14 proteasomal ATPase-associated factor 1, at 295,850 to 297,525
13625
mRNA_5258: 13626 - KOG0538 Glycolate oxidase, at 297,725 to 299,742
13626
Group
Condition
mRNA
_5254
mRNA
_5255
mRNA
_5256
mRNA
_5257
mRNA
_5258
13622
13623
13624
13625
13626
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.6
N.D.
-0.5
-0.5
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
N.D.
-0.3
+0.3
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
N.D.
-0.7
+0.2
-0.4
auxotrophy
Dropout Complete
+0.0
N.D.
+0.0
-0.1
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
N.D.
+0.7
+0.4
-0.8
auxotrophy
YNB Glucose 75mM Methionine
+0.3
N.D.
-0.1
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.4
N.D.
+0.3
-0.2
-0.4
growth on oleic acid
YNB Oleic Acid
+0.4
N.D.
+0.3
-0.3
-0.3
ypd buoyancy
40 hrs High Buoyancy
+0.2
N.D.
+0.1
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
N.D.
+0.8
-0.5
-0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.0
N.D.
+0.2
-0.1
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.1
N.D.
+0.4
-0.6
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.7
N.D.
+1.2
-0.9
-0.3
growth on oleic acid
YNB Glucose
+0.5
N.D.
+0.5
+0.1
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.1
N.D.
+0.3
+0.1
+0.4
auxotrophy
YNB Glucose
+0.3
N.D.
+0.7
+0.2
+0.1
growth on ypd
YPD
+0.7
N.D.
+0.5
+0.5
-0.4
growth on ricinoleic acid
YNB Glucose
+0.2
N.D.
+1.0
+0.4
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.6
N.D.
+1.2
-0.3
+0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
N.D.
+1.5
+0.2
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
N.D.
+1.7
+0.3
+0.2
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